SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10477

Length: 804 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10477 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-damage-inducible protein f, putative n=1 Tax=Ricinus communis RepID=B9T1P4_RICCO	-	-	7.0e-17	54%
FL-Next	sp=MATE efflux family protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Blast2go	multidrug export protein mepa	-	-	3.22144e-18	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	3.22144e-18	79%
Blast2go	antiporter activity	GO:0015297	Molecular Function	3.22144e-18	79%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	3.22144e-18	79%
Blast2go	endomembrane system	GO:0012505	Cellular Component	3.22144e-18	79%
Blast2go	membrane	GO:0016020	Cellular Component	3.22144e-18	79%

Source	InterPros	Term	Type	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
572			40	60	1.0
573	40		60		1.0
575	40		60		1.0
580	60			40	1.0
586	40		60		1.0
591		60	40		1.0
592		40	60		1.0
594		55		44	1.0
595			55	44	1.0
717	33			66	0.997452
719	66	33			0.997452
732		66	33		0.997452
733			66	33	0.997452
734	66		33		0.997452
736			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain