SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10468

Length: 1158 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10468

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2C n=1 Tax=Medicago sativa RepID=O24078_MEDSA	-	-	2.99878e-43	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	probable protein phosphatase 2c 25-like	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	66%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U3

Fln msg: Distance to subject end: 132 aas,

Fln protein: MACMAAIVSSPVLGSRRSPSLKACTEVESGKEMHPGSPVMKSPLNNVTVSPSLSLRQQVQENLGLSSVNHGLSPSRSSIQTSRLRSNRDENHPPVLQWNKNSPVKHGGDHHHVGVLGQSLVFCQRDKQRFQGRIKVKEEHTERIMTEINGSFGAVSPSLKRKRPPKLHIPKSPRELKMISLNEKAIVDESISLEGDHYGFYCKKGRKEVMEDTHNVTTNILGDNKQAFFGVYDGHGGRRAADFVAEKLGQKIVDLMLKSEKEDCEIEQTVKAGYLETDKEFLEQGVSSGACCVTALIKNGCLVVANAGDCRAVLSRNGNAESITCDHRPGR

Protein Length: 332

Fln nts: ATGGGGGAGATGTTCACAAACTACAGAAAACTTTTATCAAGTGCAACGTGAACAGTTTCCCATGAGATTCATACAAAGCTAGGTTGTGTGGAGCCTTGCCTTATTGTATTCTCTGTATTGAATTTTGCAGTGTTGTCATTAAAAATTGTAGAAGAGATCACAA_-_ATGGCTTGCATGGCTGCCATTGTCAGCTCCCCTGTTTTGGGTTCACGCAGATCCCCTTCACTGAAGGCCTGCACTGAAGTGGAATCAGGAAAAGAGATGCATCCAGGATCACCAGTGATGAAATCTCCATTGAACAATGTTACAGTTTCTCCAAGCCTGTCTCTCAGGCAGCAAGTTCAGGAGAATCTGGGCTTGAGCAGTGTCAACCATGGCCTTTCACCTTCAAGAAGCTCTATACAGACTTCTCGGCTTCGTTCTAATCGTGATGAAAATCACCCACCAGTGCTTCAGTGGAATAAGAACAGTCCGGTGAAGCACGGAGGAGATCATCATCATGTGGGTGTTTTGGGGCAGAGTTTAGTGTTTTGTCAGCGAGATAAACAGAGGTTTCAGGGCAGAATCAAGGTGAAGGAAGAGCACACAGAAAGAATTATGACAGAGATCAATGGCAGTTTCGGTGCAGTTTCTCCTTCACTCAAGAGAAAACGCCCCCCAAAGCTCCACATCCCAAAGTCTCCCAGAGAGCTTAAGATGATCAGCCTTAATGAGAAAGCTATTGTGGATGAAAGCATAAGTCTTGAAGGTGACCATTATGGTTTTTACTGTAAAAAGGGTCGGAAGGAAGTAATGGAAGACACCCACAACGTGACTACAAATATACTTGGTGATAATAAGCAGGCTTTCTTTGGTGTGTATGACGGACACGGAGGTCGTAGAGCTGCTGATTTTGTTGCTGAGAAACTTGGACAAAAAATTGTGGATTTGATGCTCAAGTCAGAGAAAGAAGATTGTGAGATAGAGCAGACAGTTAAAGCTGGATACTTGGAAACAGACAAAGAATTTTTGGAGCAGGGTGTAAGCAGTGGGGCTTGCTGTGTGACTGCCTTGATTAAAAATGGTTGCTTAGTTGTGGCCAATGCCGGTGACTGCCGGGCAGTTCTCAGCAGGAATGGTAACGCTGAATCAATTACCTGTGATCATAGACCTGGAAGGCA

Fln Alignment:

Contig10468___SPSLKRKRPPKLHIPKSPRELKMISLNEKAIVDES---ISLEGDHYGFYCKKGRKEVMEDTHNVTTNILGDNKQAFFGVYDGHGGRRAADFVAEKLGQKIVDLMLKSEKEDCEI-EQTVKAGYLETDKEFLEQGVSSGACCVTALIKNGCLVVANAGDCRAVLSRNGNAESITCDHRPGR
D5A9U3_______________SPLLKRKRPQRLDVP-----LQSLGLNAPWVAVEQPMEVNVEGFHYAVSCKKGRREFMEDTHKAIANVLGDSKQAFFGVFDGHSGRKAAAFAAENMGQNILDAMLGMEEETEDILEQAVRAGYLKTDAEFLKQEVGSGAACVTALIINGNLVVSNAGDCRAVISRDGAAEALTCDHRAGR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
394	14		85		0.993533
505	25		75		0.996473
621	25		75		0.996473
622	25		75		0.996473
654		33	33		0.997753
739	50			50	1.0
781			75	25	0.996473
839	50		50		1.0
880			25	75	0.996473
889		25		75	0.996473
922	66		33		0.997452
950	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain