SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10401

Length: 1146 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10401

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein PIR [Arabidopsis thaliana] gb\|AAS78644.1\| ARP2/3 regulatory protein subunit PIRP [Arabidopsis thaliana] gb\|AAT71307.1\| PIROGI [Arabidopsis thaliana] tpg\|DAA04564.1\| TPA_exp: PIRP [Arabidopsis thaliana] gb\|AED92557.1\| protein PIR [Arabidopsis thali	-	-	68%
FL-Next	sp=Protein PIR; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	protein pir	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	84%
Blast2go	actin nucleation	GO:0045010	Biological Process	84%
Blast2go	SCAR complex	GO:0031209	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytoplasmic FMR1-interacting	IPR008081	-	-
Sma3		IPR015706	-	-
Sma3	Cytoplasmic FMR1-interacting, subgroup	IPR016536	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5S2C3

Fln msg: Distance to subject end: 1001 aas, your sequence is shorter than subject: 280 - 1282

Fln protein: MAVPVEDAVAALSTFSLEDDQPDVQGLSIMLSTGRYATKSPIDYEDVPAYCLSLMEDTKSINQLNGLVQEGKEMAAVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEISRLREIQRWQASAASKLAVDMQRFSRPERRINGPTITHMWSILKLLDVLLQLDHLKMQKRVYPMISRRDLRTVTQVSTQWQDTDSMREDLDDLQIFLSTRWAILLNIQVELFRVNNVEDILQVLIIFCVDLLESDSALLFSERHALLRVLPVLVVLATSSEKEGDF

Protein Length: 281

Fln nts: AATGCAATCTTGCATATTGAAAGAAAACGGACTTCTTACTCAGCTCCATTTTCTACAGGTCGTTTGCGCAGGTAGGGACTTTACTGTTAAATCTCCCTGTCCAATCGACCTACGTTTCTCGTGGACGCAGCGTACGCCCTCTAGCGGGCAAAGAGTCACCGCTGACCTTTCACACCTCGGGACTCTTCAGAGTTTGTGCAGGGCTTGGAGGCCTGCAATACCTATGATCGTCGAATCCATTCTCGAATCTGAAGGAGCCGCCTAGAAGCTTCTTTCTGCCATTTATACACCAGAGCTTGAAGAC_-_ATGGCGGTTCCGGTGGAAGACGCCGTGGCAGCTCTCTCCACATTCTCGTTGGAGGATGATCAACCAGATGTCCAAGGACTATCTATTATGTTATCAACAGGAAGATATGCAACTAAAAGTCCAATAGACTATGAGGATGTCCCAGCTTATTGCCTATCTTTGATGGAGGATACAAAGTCTATCAATCAGCTAAATGGCCTGGTTCAAGAGGGAAAGGAGATGGCCGCTGTCCTTTACACATATCGTAGCTGTGTTAAAGCTCTTCCTCAGCTACCTGATTCGATGAAGCAAAGCCAAGCAGATTTGTACCTTGAAACTTACCAAGTTTTAGATTTAGAAATCAGCCGGCTTCGTGAAATCCAGAGATGGCAAGCATCCGCTGCATCCAAACTGGCAGTTGATATGCAACGCTTTTCTCGGCCAGAGAGACGAATCAATGGACCTACAATAACTCATATGTGGTCCATCCTTAAATTGCTTGATGTGCTGCTGCAGCTTGATCATTTGAAAATGCAAAAGCGAGTATACCCAATGATTTCTCGTCGTGACCTTAGGACTGTCACTCAAGTTAGTACCCAATGGCAAGATACTGATTCAATGAGGGAGGACTTGGATGACCTGCAGATATTTTTAAGTACAAGATGGGCCATTCTACTCAACATACAGGTGGAGCTTTTTCGAGTGAACAATGTTGAAGACATACTCCAGGTTCTTATCATTTTCTGTGTAGATTTGTTGGAGTCAGATTCTGCTCTGCTATTTTCAGAGCGCCATGCTCTTCTGAGAGTGCTGCCTGTACTTGTGGTTTTAGCAACATCATCAGAAAAGGAGGGGGACTTCGC

Fln Alignment:

Contig10401___MAVPVEDAVAALSTFSLEDDQPDVQGLSIMLSTGRYATKSPIDYEDVPAYCLSLMEDTKSINQLNGLVQEGKEMAAVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEISRLREIQRWQASAASKLAVDMQRFSRPERRINGPTITHMWSIXXXXXXXXXXXXXXMQKRVYPMISRRDLRTVTQVSTQWQDTDSMREDLDDLQIFLSTRWAILLNIQVELFRVNNVEDILQVLIIFCVDLLESDSALLFSERHAXXXXXXXXXXXATSSEKE
Q5S2C3_______________MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKALNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREIQRWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFIVESLELDFALLFPERYILLRVLPVLVVLATPSEKD

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
296	20		80		0.995493
297	80			20	0.995493
299		80		20	0.995493
511		16		83	0.994512
704	25		75		0.996473
712	66		33		0.997452
732	75		25		0.996473
733			75	25	0.996473
734	75	25			0.996473
736	75			25	0.996473
740		25	75		0.996473
741	75			25	0.996473
744		75	25		0.996473
745	75		25		0.996473
746	75	25			0.996473
749			75	25	0.996473
750	75	25			0.996473
751	25	75			0.996473
754	75	25			0.996473
755	25	75			0.996473
852			60	40	1.0
854		60	40		1.0
860	40	60			1.0
861	40			60	1.0
862	40			60	1.0
869			60	40	1.0
1024		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain