SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10170

Length: 2698 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene10170
CGTCGTGACCTTGGCTGTCACTCAGACTTAGGTAGTACCCAGGTTCTCACACGGTTCTTTTTATTTTTATTTTAAAAAGCATCTATACAACCCGCGCATCGAGACCTGACAATTACATACAGTGATGGGACGAGAGTCGAGTTTAGAGACTAAGAATATTGTCTTCTGGTACTGATCTGGAACGAAATCCCGACAGAGGGATAACCAGGTAGCGTATACCATCGGAGAAAGAGGAACAATGGCTCCAAAGGCGAAGGCGAAGCCTAAATCCACCAGTCAAGCAGCTGCTCCAGATTCTCGACCCGCGGCCGAGGCAGAGACTGATGCCGGGACATCCATTTCTTTTGATGATCTGTTTACAAGCCTAGACAAGCATGTCAAGGCCAGTGATTACAAACAGATCATCAAAGTCGCAGATGAGATTCTGGGTGTTGCTCCGGCAGAGGTGGATGCACTGCACTGCAAGGTGGTGGCACTCATTCAGTCTGACCAGGTCGACGAGGCATTGTCCCTTATCCAATCTTCCCACCAACTTCCCATCGATTTCAGTTTTCACAAGTCATATTGCTTATATCGGCGAAATCGGTTGGACGAAGCTCTGGAAGCCTTAAAAGGTCAGGAAAGGAATTCCAATGTTTTGCAATTAGAGGCACAAATTCTTTACCGGCAAGGAGCTGTGGATTCATGCATAAGTAGTTATGAGAAGCTTATTCAGAAATTCAAGGTTGATTCCATTGAACTCAAGACAAATATTATTGCTGCATTCATTACTGGTGGACGGTCTGCTGACACATCATCTCTAATGGCCTCAATGAAAGTTACCCCAAATAGTAGCTTTGAGATGGCATATAATGCAGCATGTGCTCTTATTGAGAAAAGCAACTTTGCAGAAGCTCAAGAGCTCCTACTTCTTGCACGCAGGATAGGGCAAGAGATGCTGATAGAAGAGGGATATACTGAGGAGGAAATAGAGAATGAACTAGCTCCCATTTCTGTTCAGCTCGCATATGTGCAACAGGCTTTAGGGAATGACGGGGATGCAATGACAGCCTATAACAATATTCTAAAACAGAAGCTAGCTGATGCTCCATCAATTGCAGTTGCAACAAATAATCTCATTGCACTGAAGGGTGCCAAGGATGTGTTTGATGGATTAAAGAAGTTTGACAAATTAATTGACAAGAGTGGTGGAGTTCAAGGATTACAGCTTGCTGATAGCCTTGAGTATAAGCTTTCTGCTAGACAGAAGGAAGCAATTTACTGTAATCGTGCACTGCTGTTACTAAATGCAAACAAGTTAGATCAGGCTCGGGAACTTATATTGACCCTTATCAACATGTTCCCAGATAGCGTGACACCGACTTTACTTCAAGCATCGTTGTTAATCAAAGAGAACAAATCTAATCAAGCAGAAGAACTTTTAGGAAAAATGACTGAAAAGTATCCAATGAAATCAACATTTTCTCTTCTTTTACGTGCCCAAGTTGCCGCAGCTGCGAGTCATTATCAGGTTGCTATTGAATCTTTGGAGTGCATAACTGAAATAAAACACCGGCCTGGAACTGTTGCTACATTAGTATCTTTAAAAGAGAAGGCAGGTGATATTGACGGGGCAGAGGCTGTCTTTGATGCTGCTATAGAGTGGTGGAGCAGCAACATGGGAGAAGATCAACACACATTGGAATCAATAATGCAGGAAGCAGCCTCTTTCAAGCTCAAACACAAGAAGGTAAAAGCAGCAGCTGGTTTGTTTGAACAGCTTGTGAAAAGCACTTCACCTCTTGTTCGTTCAGAAGCTTTGAATGGGCTTGTATCTACTACAGCTCATACAGATATTGCAAAAGCAGAAATCTATGAAAAGCAGCTGCCTCCTCTTCCAGGCCTATCTAGTGTTGATATAGTAGCCTTAGAACAAACTGCTGGTGTGCATCCTGCCACTTCGATAGGAAAACACCCTCGAGGTGCAGAATATGCTGCTAAAAGTTCAGGAGAGCAGGATGATTAAAATAAACCAAATTGAAAAAGAACGTAAGAGAAAACCAAGGTATCCTAAGGGTTTTGATCCAGCAAATCCAGGTCCACCACCTGATCCAGAAAGATGGATACCAAAGAAGGAGAGATCTACCTACAGGCCAAAGAGGAAAGACAAGAGGGCTGCACAAGTAAGAGGCTCACAAGGAGCTATTGTGAGGGATAAACCTCTTGATCATTCTGCTAATGGTCCTAGCAATTCCAGATCTAGCCACGCATCAGGCAATGCTGGAAGGGCTGCAAGCACAAGCTCGGAAGCTGCCAAGTCCTCTACGAGTGCTTCCCATAAGTCAAAGAAAAAGTCACGTCGTTGATTGCATCAGTGCTTGAAAATTTGCTGATAACTTTTATTATCTTTTTTATATTAAATTATGGTTTTACTGATTCCACTTGCATTTGAGTCTTCAAGCATTTTCGACTTGTATCTGTGATAGGAACGAAATTCAAGACATTTAGTTCATTGCGAGCTCAATTTTGGCCCTCTAGAATTTAAAATGGATCAAGGCTTTTCACAATGTATTGATTGCGGGTTTGCTTTTTGAATTTTGAGGAACGGAATCTTGCTATTGTTTTCTTTTGTTGTACCTTATGTTCTTAAATTTTCTCATTCTCGTCCACAGCATTTCAGCCTTTTTATTCTTTTCTTACCAAATATATGAAAGTTGAA

Ace file of the UniGene sp_v2.0_unigene10170 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	signal recognition particle subunit srp72	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	71%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Signal recognition particle, SRP72 subunit, RNA-binding	IPR013699	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HG38

Fln msg: Separated hits, possible frame ERROR between 1924 and 2094,

Fln protein: MAPKAKAKPKSTSQAAAPDSRPAAEAETDAGTSISFDDLFTSLDKHVKASDYKQIIKVADEILGVAPAEVDALHCKVVALIQSDQVDEALSLIQSSHQLPIDFSFHKSYCLYRRNRLDEALEALKGQERNSNVLQLEAQILYRQGAVDSCISSYEKLIQKFKVDSIELKTNIIAAFITGGRSADTSSLMASMKVTPNSSFEMAYNAACALIEKSNFAEAQELLLLARRIGQEMLIEEGYTEEEIENELAPISVQLAYVQQALGNDGDAMTAYNNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRALLLLNANKLDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLGKMTEKYPMKSTFSLLLRAQVAAAASHYQVAIESLECITEIKHRPGTVATLVSLKEKAGDIDGAEAVFDAAIEWWSSNMGEDQHTLESIMQEAASFKLKHKKVKAAAGLFEQLVKSTSPLVRSEALNGLVSTTAHTDIAKAEIYEKQLPPLPGLSSVDIVALEQTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERWIPKKERSTYRPKRKDKRAAQVRGSQGAIVRDKPLDHSANGPSNSRSSHASGNAGRAASTSSEAAKSSTSASHKSKKKSRR*

Protein Length: 704

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACTTAGGTAGTACCCAGGTTCTCACACGGTTCTTTTTATTTTTATTTTAAAAAGCATCTATACAACCCGCGCATCGAGACCTGACAATTACATACAGTGATGGGACGAGAGTCGAGTTTAGAGACTAAGAATATTGTCTTCTGGTACTGATCTGGAACGAAATCCCGACAGAGGGATAACCAGGTAGCGTATACCATCGGAGAAAGAGGAACA_-_ATGGCTCCAAAGGCGAAGGCGAAGCCTAAATCCACCAGTCAAGCAGCTGCTCCAGATTCTCGACCCGCGGCCGAGGCAGAGACTGATGCCGGGACATCCATTTCTTTTGATGATCTGTTTACAAGCCTAGACAAGCATGTCAAGGCCAGTGATTACAAACAGATCATCAAAGTCGCAGATGAGATTCTGGGTGTTGCTCCGGCAGAGGTGGATGCACTGCACTGCAAGGTGGTGGCACTCATTCAGTCTGACCAGGTCGACGAGGCATTGTCCCTTATCCAATCTTCCCACCAACTTCCCATCGATTTCAGTTTTCACAAGTCATATTGCTTATATCGGCGAAATCGGTTGGACGAAGCTCTGGAAGCCTTAAAAGGTCAGGAAAGGAATTCCAATGTTTTGCAATTAGAGGCACAAATTCTTTACCGGCAAGGAGCTGTGGATTCATGCATAAGTAGTTATGAGAAGCTTATTCAGAAATTCAAGGTTGATTCCATTGAACTCAAGACAAATATTATTGCTGCATTCATTACTGGTGGACGGTCTGCTGACACATCATCTCTAATGGCCTCAATGAAAGTTACCCCAAATAGTAGCTTTGAGATGGCATATAATGCAGCATGTGCTCTTATTGAGAAAAGCAACTTTGCAGAAGCTCAAGAGCTCCTACTTCTTGCACGCAGGATAGGGCAAGAGATGCTGATAGAAGAGGGATATACTGAGGAGGAAATAGAGAATGAACTAGCTCCCATTTCTGTTCAGCTCGCATATGTGCAACAGGCTTTAGGGAATGACGGGGATGCAATGACAGCCTATAACAATATTCTAAAACAGAAGCTAGCTGATGCTCCATCAATTGCAGTTGCAACAAATAATCTCATTGCACTGAAGGGTGCCAAGGATGTGTTTGATGGATTAAAGAAGTTTGACAAATTAATTGACAAGAGTGGTGGAGTTCAAGGATTACAGCTTGCTGATAGCCTTGAGTATAAGCTTTCTGCTAGACAGAAGGAAGCAATTTACTGTAATCGTGCACTGCTGTTACTAAATGCAAACAAGTTAGATCAGGCTCGGGAACTTATATTGACCCTTATCAACATGTTCCCAGATAGCGTGACACCGACTTTACTTCAAGCATCGTTGTTAATCAAAGAGAACAAATCTAATCAAGCAGAAGAACTTTTAGGAAAAATGACTGAAAAGTATCCAATGAAATCAACATTTTCTCTTCTTTTACGTGCCCAAGTTGCCGCAGCTGCGAGTCATTATCAGGTTGCTATTGAATCTTTGGAGTGCATAACTGAAATAAAACACCGGCCTGGAACTGTTGCTACATTAGTATCTTTAAAAGAGAAGGCAGGTGATATTGACGGGGCAGAGGCTGTCTTTGATGCTGCTATAGAGTGGTGGAGCAGCAACATGGGAGAAGATCAACACACATTGGAATCAATAATGCAGGAAGCAGCCTCTTTCAAGCTCAAACACAAGAAGGTAAAAGCAGCAGCTGGTTTGTTTGAACAGCTTGTGAAAAGCACTTCACCTCTTGTTCGTTCAGAAGCTTTGAATGGGCTTGTATCTACTACAGCTCATACAGATATTGCAAAAGCAGAAATCTATGAAAAGCAGCTGCCTCCTCTTCCAGGCCTATCTAGTGTTGATATAGTAGCCTTAGAACAAACTGCTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAAAGATGGATACCAAAGAAGGAGAGATCTACCTACAGGCCAAAGAGGAAAGACAAGAGGGCTGCACAAGTAAGAGGCTCACAAGGAGCTATTGTGAGGGATAAACCTCTTGATCATTCTGCTAATGGTCCTAGCAATTCCAGATCTAGCCACGCATCAGGCAATGCTGGAAGGGCTGCAAGCACAAGCTCGGAAGCTGCCAAGTCCTCTACGAGTGCTTCCCATAAGTCAAAGAAAAAGTCACGTCGTTGA___TTGCATCAGTGCTTGAAAATTTGCTGATAACTTTTATTATCTTTTTTATATTAAATTATGGTTTTACTGATTCCACTTGCATTTGAGTCTTCAAGCATTTTCGACTTGTATCTGTGATAGGAACGAAATTCAAGACATTTAGTTCATTGCGAGCTCAATTTTGGCCCTCTAGAATTTAAAATGGATCAAGGCTTTTCACAATGTATTGATTGCGGGTTTGCTTTTTGAATTTTGAGGAACGGAATCTTGCTATTGTTTTCTTTTGTTGTACCTTATGTTCTTAAATTTTCTCATTCTCGTCCACAGCATTTCAGCCTTTTTATTCTTTTCTTACCAAATATATGAAAGTTGAA

Fln Alignment:

Contig10170___DDLFTSLDKHVKASDYKQIIKVADEILGVAPAEVDALHCKVVALIQSDQVDEALSLIQSSHQLPIDFSFHKSYCLYRRNRLDEALEALKGQERNSNVLQLEAQILYRQGAVDSCISSYEKLIQKFKVDSIELKTNIIAAFITGGRSADTSSLMASMKVTPNSSFEMAYNAACALIEKSNFAEAQEXXXLARRIGQXXXXXXXXXXXXXXXELAPISVQLAYVQQALGNDGDAMTAYNNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRXXXXXXXXXLDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLGKMTEKYPMKSTFSLLLRAQVAAAASHYQVAIESLECITEIKHRPGTVATLVSLKEKAGDIDGAEAVFDAAIEWWSSNMGEDQHTLESIMQEAASFKLKHKKVKAAAGLFEQLVKSTSPLVRSEALNGLVSTTAHTDIAKAEIYEKQLPPLPGLSSVDIVALEQTAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERWIPKKERSTYRPKRKDKRAAQVRGSQGAIVRDK----PLDHSANGPSNSRSSHASGNAG
F6HG38_______________EDLFTSLNLHIQRSQFDQAVKVADQILLVAPSDEDAIRCKVVALIKEDRINDALSTIQASQRLPIDLSFFKAYCLYRQNKLDESLESLKSQEGSSTAMLLESQILYRLGKMDACIDIYQKL-QKSKIESLEI--NLVAGLVSAGRGSDVQGTLDALRVKATSSFELAYNTACSLIERSKYKDAEQLLLSARRVGQETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLAVAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAKVVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAIQWWSNAMTED-NKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSV---QALIGLVTTAARVDVDKAEAYEKQLKPLPGLKGVDVESLERTSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREKHEAAGSDTSAN-TSNSKSDQATTSKG

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
2032			33	66	0.997452
2046		25		75	0.996473
2566	10			90	0.90298
2567		90	10		0.90298
2568		10		90	0.90298
2570	10		90		0.90298
2571	10			90	0.90298
2572		90	10		0.90298
2573		90	10		0.90298
2576		10		90	0.90298
2577		90	10		0.90298
2580			10	90	0.90298
2585		33	66		1.0
2586		33		11	1.0
2587		33		66	1.0
2588	66	22	11		0.999999
2589	88			11	0.923564
2590			12	87	0.992554
2593	16			83	0.994512
2597		16	83		0.994512
2600	20			80	0.995493
2601	20	80			0.995493
2603	80		20		0.995493
2607	20		40	40	1.0
2609	40		60		1.0
2610	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain