SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9939

Length: 1386 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9939

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plant UBX domain-containing protein 1 [Arabidopsis thaliana] dbj\|BAB02126.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM61610.1\| unknown [Arabidopsis thaliana] gb\|AAS78923.1\| CDC48-interacting UBX-domain protein [Arabidopsis thaliana] dbj\|BAD430	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	plant ubx domain-containing protein 1	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	organ growth	GO:0035265	Biological Process	67%
Blast2go	protein complex disassembly	GO:0043241	Biological Process	67%
Blast2go	soluble fraction	GO:0005625	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	UBX	IPR001012	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 226 - 247

Fln protein: MDAAEAQAKLAAVAGELGREVLVFLSPAARNSHNPKTIPDVPDDFYEFTTEDYIRLLSSKKEESILKTKKLRDAELAACRAKITKAVIKVQFPDDHLIQATFQPSETISVLMDLLKKVIAQPDVPFYIYTTPPKKRITDLTKDFYSANFVPGALVRFHYDVPEEEEKGPFLRDDIMALCDLHTLLEAKEAEKPAEPEPLAAEPPAEPSNGRPVAKKDVKPKWLRM*

Protein Length: 227

Fln nts: CGTCGTGACCTTGGGTGTCACTCCTGCTGGTTTCAGGTAGTACTATCATGAACGAATCGCCCTTAATGGAAGAGGGACCGTAGGAGGGTAGTTGGCCTACCTTCCACTATACAATATAATATCTGTCCTAATCTATAGGTAACTATATATACATGATCAATCAGATAAAACCCTTACCCCCACTTCCCAAGAAAAACACAACAGTAATTACAGAGATTTGGTTTTTGTAATTTGCGTTGAAACGCATCGAATTGCATTGATACGTTGAATCAAGATTGTTAAGGTGGAGTTTTTCAACTGAAGTTGAAGCACCAGTAGACGTAGCAATTTTCTCAACAAAAGCAGTCCAATTGGGTAAGAAGACAAACCAGGCACAAATAGCGCAGAGATAGAAGGCTATAGTC_-_ATGGATGCAGCGGAAGCCCAGGCTAAGCTTGCAGCAGTTGCTGGGGAACTGGGACGGGAAGTACTTGTTTTTCTCAGTCCGGCTGCTAGAAATTCACATAACCCAAAAACGATTCCAGATGTGCCAGATGACTTTTATGAGTTTACTACTGAGGATTATATTCGACTGTTGTCCAGCAAGAAAGAAGAAAGCATTTTGAAGACCAAAAAACTCCGTGATGCAGAACTGGCCGCTTGCAGAGCAAAGATAACTAAGGCAGTAATAAAGGTGCAATTTCCCGATGATCATCTAATACAGGCAACTTTTCAGCCATCAGAAACAATTTCTGTGCTGATGGATCTGTTAAAAAAAGTGATTGCACAACCAGACGTGCCATTTTACATTTATACAACACCCCCAAAGAAAAGAATCACAGATTTGACAAAGGATTTTTATTCTGCTAATTTTGTACCTGGTGCACTTGTGCGTTTCCACTATGATGTGCCAGAAGAGGAAGAGAAGGGCCCCTTTCTACGCGATGATATTATGGCTTTGTGTGATCTGCATACCCTACTTGAAGCAAAAGAAGCGGAAAAGCCAGCTGAACCTGAACCTCTTGCTGCAGAGCCTCCAGCAGAGCCTTCCAATGGTAGACCTGTTGCTAAAAAAGATGTCAAGCCCAAGTGGTTGAGAATGTAGTCTTGCGTGTAATTGATTAGGATTTGTTAAATTAACTAGCAAAGTATGAATTACGCCTTTCTGCTAAAGCTGCAAGGCTTGTATTTACGTTGATGCTCACTGTAATGCAGGGTTGACTAAATATCTTAGAAAATGCTGAATGCACTGCCTTGCTCTAAGCTGTGTTTGTATACAGTATTGCATGCAATGATTTAGGCAGAATTCTGTAGACTTCATAATTGTGTGAAGTAGGATAGACCTCATAATTGTGTGAAGTAGGATTTTCCTGTTTATAGTTTATTGTTATATTAGGAACATACAAAAA

Fln Alignment:

Contig9939___GELGREVLVFLSPAARNSHNPKTIPDVPDDFYEFTTEDYIRLLSSKKEESILKTKKLRDAELAACRAKITKAVIKVQFPDDHLIQATFQPSETISVLMDLLKKVIAQPDVPFYIYTTPPKKRITDLTKDFYSANFVPGALVRFHYDVPEEEEKGPFLRDDIMALCDLHTXXXXXXXXXXXXXXXXXXXXXXXXSNGRPVAKKDVKPKWLRM
A9NWT9______________GELGREVHVFVNPAARNSHNPKPISDEPDDFYEFTTEDYIRLLASKKQESILKTKKLRDAELAACRAKITKAVIKVQFPDDYLIETTFHPSETISMLMDLLKKVIAQPDVPFYIYTTPPKKRITDLTKDFYSANLVPGALVRFHYDVPEEEEKGPFLRDDIMALRDLHSLLEAKEAEKPAESEPLAAEPPPEPSNNRPVAKKDVKPKWLRM

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
84	66	33			0.997452
88		33	66		0.997452
89		33	66		0.997452
90			66	33	0.997452
92	66		33		0.997452
94		33		66	0.997452
97			66	33	0.997452
103	33	66			0.997452
126		33		66	1.0
198	66		33		0.997452
237		80	20		0.995493
252	80		20		0.995493
255			16	83	0.994512
257		83	16		0.994512
275	83	16			0.994512
287		16		83	0.994512
288	16		83		0.994512
616	83		16		0.994512
827	83		16		0.994512
1085		8		92	0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain