SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9702

Length: 1203 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9702

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dehydroascorbate reductase [Zinnia elegans]	-	-	5.04467e-44	44%
FL-Next	tr=Dehydroascorbate reductase; Pinus bungeana (Lacebark pine).	-	-	0.0	49%
Blast2go	dehydroascorbate reductase	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B2ZHM6

Fln msg:

Fln protein: MSDLEVFGKAAPGTGSPSKERGDCPFSQRIFLELEELGLPYTATYIQEGPNKPHWFMVKNPSGLMPVLRDGETWIQDSDKIAEYLDKHYAENTLKTPVEFRDVGSKIFPIFTKWLQSKDPGSPCRDEFVEELVRFDRHLQKHGPYIAGERPTDSDFALAPKLRHARVALAHFMDFQFPEELGALQSYMNRMESRESFEKTNYPDEMIIQGWRAKFNLPEKIANVPN*

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGCCACCTCAGTTGAAGTCTCTCATTTCTCTGCTAGTTCTAGCATTTTCCAACTGTTGCTATGGTTCATTTTGCAGTGTTAAATTCGTCGTGACCTTGGCTGTCACTCAAAGTTCTATTCATTCATCAAAACT_-_ATGTCAGACCTCGAAGTTTTTGGTAAGGCTGCTCCAGGAACCGGGAGCCCAAGCAAGGAGAGAGGAGATTGCCCGTTTTCACAGAGGATTTTCTTAGAACTGGAAGAACTTGGCTTGCCTTATACTGCAACTTACATCCAGGAAGGACCCAACAAACCCCACTGGTTTATGGTGAAAAATCCTTCTGGACTGATGCCCGTTCTTAGAGATGGGGAAACATGGATCCAAGACTCTGATAAAATTGCAGAATATTTAGACAAGCACTATGCCGAGAATACCCTAAAAACCCCTGTGGAATTCAGGGATGTTGGGAGTAAAATCTTTCCGATATTTACAAAATGGCTCCAAAGCAAGGATCCCGGCAGCCCCTGTAGAGATGAATTTGTGGAGGAGCTCGTACGGTTTGATCGCCATTTGCAGAAACATGGACCATATATAGCTGGGGAGAGGCCTACGGATTCAGATTTTGCATTGGCACCTAAGCTTCGCCATGCCCGAGTGGCCTTGGCTCATTTCATGGACTTTCAATTTCCCGAGGAGCTCGGCGCACTGCAGAGCTACATGAATCGGATGGAATCTCGAGAGAGCTTTGAGAAGACCAATTATCCCGATGAAATGATCATCCAAGGGTGGCGTGCGAAATTTAACTTACCAGAGAAAATCGCCAATGTTCCCAACTGA___GCAAGCTTCTCAATTTATATCCGTAGACGACTCTTAAATGTGGACGATTTGTCTGTAAATGTATAGTCATGGATATGTAAATGTATAGTCATGGATATCTGAAACTGAAACTTATTTATGTATGAAGTGTGTATACAGAGGAGTTTCTCCAAATCGTCGTCTTCGATGAAGATTCTCCCTCCGAATCTGGAAAAAGTTCCCTACCCGTGTTACCATGGCTGGTCAATAAAGTGTGTTATTGGTGAAGATAATAAAGATCCTCACTCCTGCTGCTCTGCTCCGATGACATCTCCTTAGTCTTAATGAAATTGGTGTTTCAGTTATCTAATGGTCTCCCATTACACCATGCAATTCAGAATTTG

Fln Alignment:

Contig9702___LEVFGKAAPGTGSPSKERGDCPFSQRIFLELEELGLPYTATYIQEGPNKPHWFMVKNPSGLMPVLRDGETWIQDSDKIAEYLDKHYAENTLKTPVEFRDVGSKIFPIFTKWLQSKDPGSPCRDEFVEELVRFDRHLQKHGPYIAGERPTDSDFALAPKLRHARVALAHFMDFQFPEELGALQSYMNRMESRESFEKTNYPDEM-IIQGWRAKFN
B2ZHM6______________LEVFVKAA--TGAPDK-LGDCPFSQRVLLTLEEKQVPYNMKLIDTS-NKPEWFLQINPEGKVPVIKIDDKWIPDSDVITQILEEKYPEPPLATPPEKATVGSKIFSTFIGFLKSKDPNDGTEQALLNELRAFDEYLKDNGPFINGEKISAADLSLAPKLYHMKVALGHFKKWSVPEEFTYVQSYMKAVFSRESFQRTNAADEQYIIAGWFPKVN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
252	29		70		1.0
395		85		14	0.999981
539		25	75		0.996473
540	75			25	0.996473
541		25	75		0.996473
574		75		25	0.996473
636	75		25		0.996473
654		80		20	0.995493
656	80		20		0.995493
659	20	80			0.995493
664			80	20	0.995493
669		80		20	0.995493
670			20	80	0.995493
672		20	80		0.995493
673	20		80		0.995493
678		20		80	0.995493
700		20	80		0.995493
719	85		14		0.993533
722	14		85		0.993533
774		60	40		1.0
827		11		88	0.923564
843		64		35	1.0
965		50		50	1.0
986		50	50		1.0
1072	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain