SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9691

Length: 1883 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9691

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO	-	-	40%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	rna polymerase ii c-terminal domain phosphatase-like 1-like	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q5YDB6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 454 - 967

Fln protein: S*PWLSLTCCS*SFCSQSFNAIESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPNQAPGGWLGPEEEMSPRQITRPSQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCFDESKRRLPEDGYFGDDKLKNNHMIPDSFSHSEDEDSSMNKSSSNLKPGRVNALIAPNTVGVLQEIAAKCGAKVEFISLLNTTMELEFSVEVLFSGEKVGAGIGRTKKEAQHRASEDALKYMASQYMSQPGSGAALGRVNTDSSFHAWGDDDGLRETSSSIGFVGAPKEEDMPIASTSGQSKNGEQRLPEDSKKSYNAIETLKEMCTVEGLSLLFQEPAVGNMNRRECWAQVEVAGQILGKGSGPSWEAAKLQAAEEALRNFKSTVSQRTQKRLSSPRPVSVQPNKRIKPADSSRGAPRILPSPRRYPKNGPPIP*

Protein Length: 455

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTGCTGCAGTTAGAGTTTTTGTTCCCAAAGTTTTAATGCTATAGAATCTGGTGTGCAAGGTTCACCAAGTAGAGAAGAAGGTGAAGTCCATGATACTGAATTGGATCCGGATACAAGAAGGCGGCTTCTCATATTACAGCATGGCCAAGACACTGGGAAACATAATTCTGTTGATCCTCCTTTCCCAGTTAGGCCATTGAAAATTACATTGCCCCCAAATCAAGCTCCTGGTGGATGGCTTGGACCAGAGGAGGAGATGAGTCCTAGGCAAATTACAAGGCCATCTCAAGGACCTCCTCTTCAACCTGATTCTCTCTCTTTTGATAAGCAACGGCTCCCGCAACCTTCATATTATCATGGTGCAGAGAATTCTCTTGCCAATGATAGGTGTTTTGATGAATCTAAAAGACGGTTACCTGAAGATGGATATTTTGGAGATGACAAACTCAAAAACAATCACATGATTCCGGATTCATTTTCCCATTCAGAAGATGAAGATTCCTCTATGAACAAAAGTTCATCTAACCTCAAACCTGGACGAGTGAATGCACTGATTGCTCCCAATACTGTTGGTGTTCTGCAAGAAATTGCTGCGAAGTGTGGTGCAAAGGTGGAATTTATTTCACTGCTGAACACAACAATGGAGTTAGAGTTCTCGGTTGAGGTCCTGTTTAGTGGTGAAAAAGTGGGTGCAGGCATAGGTAGAACCAAGAAGGAAGCACAACATCGAGCATCTGAAGATGCTCTTAAATACATGGCAAGTCAATATATGTCACAACCTGGATCAGGAGCAGCACTTGGGCGCGTGAACACAGATTCAAGTTTTCATGCATGGGGTGATGATGATGGCTTAAGAGAAACTTCGAGCTCTATAGGTTTTGTTGGTGCACCTAAGGAAGAGGACATGCCCATCGCAAGTACTTCAGGGCAGTCAAAAAATGGTGAACAGAGGTTGCCTGAAGACTCTAAAAAGTCATATAATGCTATTGAAACCCTCAAAGAAATGTGCACTGTGGAAGGTCTTAGTCTTCTTTTCCAAGAACCAGCTGTTGGAAATATGAACAGGAGGGAATGCTGGGCACAAGTTGAAGTAGCTGGACAAATCTTGGGAAAAGGTAGTGGTCCAAGTTGGGAGGCAGCGAAGCTACAGGCTGCAGAGGAGGCTCTTCGTAATTTTAAGTCCACAGTCAGTCAGCGGACACAAAAGCGTTTGAGCTCTCCAAGGCCAGTGTCAGTTCAGCCAAATAAAAGGATTAAGCCTGCAGATTCGTCACGTGGGGCACCTCGGATACTACCTTCTCCAAGAAGATATCCTAAAAATGGACCACCTATTCCTTAA___CATGTAGTAGAGGATGATGAATCTGTTTTCAAGTTAAATTTGCTTGTACAATAGTGGCTTGGGCTGCTTCCTCCACGGCAATTTTGCATGGAATGTCTCATATAAGACTTTTCATAAATGTCTTGTGATTCTTTCAGCATAGTGCCTTCCTATGTTCATGTCTCAAAATAAGCTGAAAGGTCCAGTGCTCAAATTGAGCTGAATGAAATTAAGACCTGTTTTGCCAATTTATGAAGACATAGAGACAAAAGGAGGGGCTCGCTAAATGACTAGATAAATCTTCTTTTTGTACACTCGCCAGTTTTAAGAAATGGAGATCGTGCTCTGGAAGGTTGTATTCAGGGTTTAGACTTACGATGAGGAAGCATTTTCTCTTTTCTTAGCTTTGTAATGTTAATGAGAATGGAGGTCACTATCACGTTTTCCAAAAATATCAGACCGTTGATTTACTGTCTTTGTTATTTGATGATATGATCTATTGAAGCAGACCAAAATTTAATAGATTATCAATTTAATCAA

Fln Alignment:

Contig9691___ESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPN--QAPGGWLGPEEEMSPRQITRP-SQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCFDESKRRLPEDGYFGDDKLKNNHMIPXXXXXXXXXXXXMNKSSSN----LKPGRVNALIAPNTVGVLQEIAAKCGAKVEFISLLNTTMELEFSVEVLFSGEKVGAGIGRTKKEAQHRASEDALKYMASQYMSQPGSGAALGRVNTDSSFHAWGDDDGLRETSSSIGFVGAPKEEDMPIA----STSGQSKNGEQRLPEDSKKSYNAIETLKEMCTVEGLSLLFQ---EPAVGNMNRRECWAQVEVAGQILGKGSGPSWXXXXXXXXXXXXRNFKSTVSQRTQKRLSSPRPVSVQPNKRIKPADSSRGAPRILPSPRRY
Q5YDB6______________EPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRP-PVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHEN-RRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPER-SVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNLADGYMRANGDPGPSHR-------------DATPFTNENISMGNANALNNQPFARDETALPVSSRPTDPRL-EGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRSFGGMSNKRLKP-DFQRSLQR-MPSSGRY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
321	80	20			0.995493
374	50		50		1.0
807	28			71	1.0
824	85			14	0.993533
986	14		85		0.993533
1297			75	25	0.996473
1447		83	16		0.994512
1451	16		66	16	0.988813
1670		90		10	0.90298
1717	16		83		0.994512
1759	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain