SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9654

Length: 1638 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9654 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase 22 n=2 Tax=Oryza sativa RepID=BGL22_ORYSJ	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	beta-glucosidase 11-like	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	0.0	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACM5

Fln msg: your sequence is longer than subject: 467 - 415

Fln protein: MPDKSTGDVAADQYHHYKADVALMSEMGLDAYRFSISWSRLIPDGRGVINPKGVEYYNNLINELIHHGIEPHITLYHFDLPQSLEDAYEGWLNPQIVKDFKAYAEVCFREFGDRVKYWITFNEANAFPILGYDLGVWPPQRCSYPFGNCSAGNSTVEPYIVGQRVLLSHAVTVELYREKFQKKQKGSIGISIYAAWFVPMTNSSEDSAATQIILDFLYGWIIEPVMYGDYPSSMRKIVGSTLPSFTKQESEKLRGSFDFIGLVHYTTVYASDAPSYRDLTPRDFLEDMLATISVYRNGIPIGELAPTGIPIVPWGMQALLEYFKGHYANPPLIIYENGYGRSNNESLPLADALNDKPRAAYLHDYLQSLLAAVRNGSNARAYFVWSLVDSFEFLYGYTIRYGLYYVDFKHRDLKRYPNLSVRWYTHFLKRYTDHRPVRSCCYDHDHNNFNVYSFRKNSHCWKQFRK*

Protein Length: 468

Fln nts: ATTTATCGATCGGAGTCTAAGTCTATGATAACCAGACATGACTTTCCTTCGGATTTTATTTTGGCGCAGGCACTTCTGCCTACCAGGTCGAAGGCGCTGCAGCATTAGATGGCCGAAAACCCAGCATTTGGGATACTTTCACCCACGCAGGTAAC_-_ATGCCCGATAAAAGCACAGGAGATGTAGCAGCAGATCAATATCACCATTATAAAGCGGATGTTGCTCTCATGAGTGAAATGGGGTTAGACGCTTACAGATTTTCTATCTCCTGGTCTCGACTTATACCTGATGGAAGGGGAGTCATCAATCCCAAGGGGGTTGAATACTACAATAATCTTATCAACGAACTTATCCACCATGGTATTGAGCCACATATCACATTGTATCACTTCGATCTGCCTCAAAGTTTGGAAGATGCTTATGAGGGATGGCTCAATCCCCAGATAGTGAAGGACTTCAAAGCATATGCGGAAGTTTGCTTTAGAGAATTTGGTGACAGGGTGAAGTATTGGATTACTTTTAACGAAGCAAATGCATTTCCTATCCTGGGTTATGATCTTGGTGTATGGCCACCTCAACGATGTTCTTATCCGTTTGGCAATTGTAGTGCTGGAAACTCCACAGTGGAACCATACATTGTTGGTCAACGTGTTTTGTTATCCCATGCGGTGACAGTAGAGCTTTACAGGGAGAAGTTCCAGAAGAAGCAAAAGGGCTCCATCGGCATCTCCATCTATGCAGCCTGGTTTGTACCAATGACAAACTCGTCCGAAGACAGCGCTGCGACTCAAATAATCTTAGATTTCTTGTATGGCTGGATAATAGAGCCTGTTATGTATGGAGATTACCCTTCTTCTATGAGGAAGATTGTAGGCTCCACATTGCCTTCTTTCACCAAACAGGAATCCGAAAAGCTGAGGGGCTCCTTCGATTTCATTGGTCTCGTCCATTATACTACTGTTTATGCTTCGGATGCTCCTAGTTACAGGGATTTAACCCCAAGAGACTTTCTAGAAGATATGTTGGCAACCATTTCAGTGTATCGAAATGGCATCCCTATTGGTGAGCTGGCTCCTACTGGAATTCCTATTGTCCCATGGGGAATGCAAGCATTATTGGAATACTTCAAAGGACACTATGCTAATCCTCCTCTAATAATTTATGAAAACGGATATGGGCGGTCCAACAATGAATCTCTTCCACTTGCGGACGCATTAAACGATAAGCCAAGAGCAGCCTACCTCCATGATTATCTTCAAAGCTTGCTTGCAGCTGTCAGGAATGGATCAAACGCCCGCGCATACTTTGTGTGGAGTTTGGTTGATAGTTTCGAGTTTTTATATGGTTATACAATCCGCTACGGGCTGTATTACGTGGATTTCAAACATAGAGATTTGAAGAGGTACCCAAATCTTTCTGTTCGCTGGTACACACATTTCTTAAAGAGATACACAGATCATCGACCTGTCCGATCATGTTGTTACGACCATGATCACAATAACTTCAATGTCTACTCCTTTAGGAAGAACAGCCACTGCTGGAAGCAATTTAGAAAGTGA___GCTTCAACGGGTCGATATAGATTACAATGGATACGAATCCTGTGAATAATGCGGGTTATTGCGCATAACGATATGTTTTCTA

Fln Alignment:

Contig9654___MSEMGLDAYRFSISWSRLIPDGRGVINPKGVEYYNNLINELIHHGIEPHITLYHFDLPQSLEDAYEGWLNPQIVKDFKAYAEVCFREFGDRVKYWITFNEANAFPILGYDLGVWPPQRCSYPFGNCSAGNSTVEPYIVGQRVLLSHAVTVELYREKFQKKQKGSIGISIYAAWFVPMTNSSEDSAATQIILDFLYGWIIEPVMYGDYPSSMRKIVGSTLPSFTKQESEKLRGSFDFIGLVHYTTVYASDAP-SYRDLTPRDFLEDMLATISVYRNGIPIGELAP-TGIPIVPWGMQALLEYFKGHYANPPLIIYENGYGRSNNESLPLADALNDKPRAAYLHDYLQSLLAAVRNGSNARAYFVWSLVDSFEFLYGYTIRYGLYYVDFKHRDLKRYPNLSVRWYTHFL
D5ACM5______________MYEMGLDAYRFSISWPRLIPEGRGAINPKGVEYYNSLINELLDHGIRPYITLHHFDLPKSLEDSYGGWVNPQIVEDYLAFADICFREFGDRVKNWITFNEPNIFASLGYDRGIIASKRCSIPVGRCKTGNSTIEPYLAGHYMLLSHAAAVKLYRDKYQAKQKGSIGLIILSQWYRSLTNTIQDITATQRMTDFEIGWFLDPLIYGDYPKVMRQIVGSRLPLLTEKQSREIRQSFDFIGLNHYSTNYVEDAPAAHANNYERDYFTDLSVRVTVERDGIPIGQMSKIKGFGSVPWGFQELLEYIRQHYGNPPVVVTECGYPDLSNDSIPVAEALNDTNRINYYHDYLQYMLAAIRNGSNTRGFFVWTLLDDFEYVMGYTARFGLHYVDFSD-NLKRYPKLSVRGFKRML

SNPs (tot: 4)

Position	A %	C %	T %	Probability
995	10		90	0.90298
1026	11		88	0.923564
1039	87	12		0.992554
1044	16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain