SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9561

Length: 759 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9561

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF300 domain containing protein	-	-	3.0e-40	42%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	transmembrane protein 184c-like	-	-	8.21134e-38	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	8.21134e-38	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Organic solute transporter Ost-alpha	IPR005178	-	0.0	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
13		33	33	33	0.997753
15		33	33	33	0.997753
16		33	33	33	0.997753
19		33	66		0.997452
21		66	33		0.997452
24	33	33	33		0.997753
27			33	66	0.997452
28			33	66	0.997452
29		33	66		0.997452
30			66	33	0.997452
34	33			66	0.997452
35		33		66	0.997452
36			66	33	0.997452
37		33	66		0.997452
38	33		66		0.997452
91		90		10	0.90298
103			70	30	1.0
148		70	30		1.0
245		70		30	1.0
273	90		10		0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain