SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9544

Length: 1248 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9544 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem I reaction center subunit III [Vigna radiata]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	86%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	86%
Blast2go	photosystem I reaction center	GO:0009538	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaF, reaction centre subunit III	IPR003666	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN3

Fln msg:

Fln protein: MAMTMAMAGVSTYVPTGLAKPLRTPKNPATSLSTTFNVPHCKPRTVCSASEEKNKNQSNNKSSNAFANISTALALAAVMAAAPVLAPSEARADISGLTLCKDSKAFAKREKQSLKKLENSLKPYAADSAPALAIKASIEKTQKRFDNYKSEGLLCGTDGLPHLVVDGDQAHWGEFILPGVGFLYVAGWIGWVGRSYLIAVRSDKKPTQREIVIDVPLASRVLWRGIIWPLAALNEVRSGTLVEDDANITVSPR*

Protein Length: 255

Fln nts: TTTTTTCCTCATTCCACAACTCATATCCTCACAATCTGAACAAACATCCAACCTCTCCTGGTATACTCCAACATCCTCGGCACCTCGGCA_-_ATGGCGATGACAATGGCGATGGCAGGAGTATCAACATACGTTCCCACGGGACTGGCCAAGCCTCTGCGAACGCCCAAGAACCCGGCGACCTCCCTGTCGACCACGTTCAACGTACCCCACTGCAAACCCCGCACAGTGTGCTCCGCCTCGGAAGAGAAAAACAAGAACCAGAGCAACAACAAGTCGTCGAATGCGTTCGCCAACATATCCACGGCTCTGGCTCTGGCGGCGGTGATGGCGGCGGCTCCCGTGCTGGCGCCGTCGGAGGCGCGCGCCGACATCTCCGGGCTAACCCTCTGCAAGGATTCGAAGGCGTTCGCGAAGCGGGAGAAGCAGTCACTGAAGAAGCTGGAGAACAGCCTGAAGCCGTACGCCGCCGACAGCGCGCCGGCGCTGGCCATCAAGGCGTCCATCGAGAAGACGCAGAAGCGGTTCGACAACTACAAGAGCGAGGGCCTGCTGTGCGGCACCGACGGGCTGCCGCACCTGGTGGTGGACGGTGACCAGGCGCACTGGGGCGAGTTCATCCTCCCGGGCGTCGGATTCCTCTACGTCGCCGGCTGGATCGGATGGGTGGGCCGCAGCTATTTGATCGCCGTCAGGAGCGACAAAAAACCCACCCAGAGAGAAATCGTCATCGACGTTCCCCTCGCTTCCAGGGTTCTGTGGAGAGGAATCATTTGGCCTCTTGCTGCTCTCAACGAAGTCAGGAGCGGAACCCTCGTCGAAGATGACGCCAATATTACTGTTTCCCCCCGCTAG___ATTTTATCCCACATTTACAGAGAAAATCAAAACTCGGGTATGTATGATTGTATGTGTGATTTTCGTTGGGCTTCTTGTTTTTTTTTCTCAAATAGCGCTGCCTTGGTTTTGTTTGGTTTGCATGATGGAAAATTCTTTGTACCTTTTTTATGGCAGATGTCTTCATATTTTCCTCTGTAACTGCAATTTTACTTTGGCGATCTTCTAAGAAACGGCCACTGAATCGATGGAACTTGTTTTGATTTGTATTATGTATACTGTCTTCTGCGGTCTTCCAAACATGATCCGCCTTGAAGGTTAATCCTGTGTTGATATAAGGTGTCATATCATGAATACAGGACTGCCCATTTCtCCATTACAGTTCAGTCATACTTACGTGTAACAGAGCATAATTTG

Fln Alignment:

Contig9544___GVSTYVPTGLAKPLRTPKNPATSLSTTFNVPHCKPRTVCXXXXXXXXXXXXXXXXXXXXXXSTXXXXXXXXXXXXXXXPSEARADISGLTLCKDSKAFAKREKQSLKKLENSLKPYAADSAPALAIKASIEKTQKRFDNYKSEGLLCGTDGLPHLVVDGDQAHWGEFILPGVGFLYVAGWIGWVGRSYLIAVRSDKKPTQREIVIDVPLASRVLWRGIIWPLAALNEVRSGTLVEDDANITVSPR
A9NWN3______________GVSTYVPTGLAKPLRSPSTSKSTLSSTFNLPHCKSRTVCSASEGGQEEKNKNKKSNAFANISTALALAAVMSAAPVAVPSEAHADVSGLTPCKDSKAFAKREKQSLKKLENSLKPYAPDSAPALAIKASIEKTKKRFDNYGKAGLLCGTDGLPHLVVDGDQAHWGEFILPGVGFLYIAGWIGWVGRSYLIAVRPEKKPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTLVEDDANITVSPR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1063		85	14		0.993533
1123		14		85	0.993533
1124	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain