SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9480

Length: 1250 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9480

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FFD_TFG multi-domain protein	-	-	3.0e-11	46%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	49%
Blast2go	protein	-	-	1.32089e-20	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8SR19

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 201 - 504

Fln protein: S*PWLSLRGRGRGRWRARGKGRGGLGCSHFNQNRQEFLEDFDFVTMNEKFKKEEVWGELGSVDKVANSALVERNPQDSGSEMPTGKASINLSTNVKPIYVKDDFFDTLSCDALDRKGGRVEHMKYSEQRKVDSETFGNMSFRSHKRGGRRRGSFRHSYSSDYNIHRGGNHSSERKDKNEYNARACVPSSSARSRQLEGYQ*

Protein Length: 202

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGACGAGGAAGAGGTAGATGGAGAGCTAGAGGGAAAGGTCGTGGTGGCCTTGGCTGTAGTCACTTTAATCAGAACAGACAAGAATTCTTGGAGGATTTTGATTTTGTTACCATGAATGAAAAGTTTAAGAAGGAGGAAGTTTGGGGAGAACTTGGCAGTGTAGACAAGGTTGCAAATTCTGCCCTTGTGGAGAGGAATCCTCAAGACAGCGGATCAGAAATGCCTACAGGCAAAGCTTCTATAAATTTGTCTACAAATGTAAAGCCAATATATGTCAAAGATGATTTCTTCGATACTCTCTCATGTGATGCCCTTGATCGCAAAGGTGGCCGGGTTGAGCATATGAAATACTCAGAGCAGAGGAAGGTTGATAGTGAGACATTTGGGAACATGTCTTTTAGATCACACAAGCGAGGTGGCCGTAGACGTGGAAGTTTCAGGCACAGCTATTCATCTGATTACAATATCCACAGGGGAGGAAACCATTCTAGTGAGAGAAAGGATAAAAATGAGTACAATGCCAGGGCTTGTGTACCTTCTTCAAGTGCAAGGAGCAGACAACTGGAAGGTTATCAGTGA___TTCAAGTGTGCTATGTGGTAGTTTAATTCGAAAGATTGACATGTGGTATTAAATGCTTAGCAGTCTGTAATTCATTCAAGTTGATGAGGACTGGTATGATAAAAATATCTACGTCATGTCAATCATTACGGCCTGAGGATCTAATGCTACTATGTTTAGGTGCACTTAATTATTTTTTGTTTGTGACTTGTATTTATAGGTTTATTTTATGGGCCGTTAAAAACAAGACCCTTGTTTTATAGAGCTCAAATGAGAGTATTGTATTTAATTTATTGCAATAATGAAATTGCGTGACGTTGGCTGTCAATTAAAGGGAAATGTAAGTGATGTAGAAGACCTTTGCAAAAACTACCAAATGGAATGTATACTGTGGGTTGAAAATTGGGACAATGCAACATTCATCACGTTTGGTTGCTCATTGTCTTAAAGAGATACCGGCATGTAATTGAAAAAGCTATAGCTTTCATCTAGAATGTTTATTGAATAATCCCGTAGATTGGATTCAGGGATTTAAACCGGGTCTTCTTTTTTACTCTGCGGCTTTGCAAAGTAAAGAATATGAGATTCCTGGGAATTGAATTGTAATGATATCGAGAATTTAACACCCTAAATTACGTGGCACTGTTGAATGTCAAACCAATATCT

Fln Alignment:

Contig9480___RQEFLEDFDFVTMNEKFKKEEVWGELGSVDKVANSALVERNPQDSGSEMPTGKASINLSTNVKPIYVKDDFFDTLSCDALDRKGGRVEHMKYSEQRKVDSETFGN
D8SR19______________RTNFTEDFDFMAMNEKFNKDEVWGELGGKVEPRN-----------GEDEPVSENWQKPEDGKKPVYVKDDFFDSLSCDTLDREGG-TERPRFSEQRKINTETFGD

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
215		66	33		0.997452
217		33		66	0.997452
221	33		66		0.997452
222	66	33			0.997452
223		33	66		0.997452
224	66			33	0.997452
225			66	33	0.997452
227	66			33	0.997452
228	66	33			0.997452
231		66	33		0.997452
235	66	33			0.997452
236			66	33	0.997452
237	66	33			0.997452
238	33	66			0.997452
342		80	20		0.995493
394			80	20	0.995493
395	80			20	0.995493
396	80	20			0.995493
397	20		80		0.995493
398		20	80		0.995493
472	33		66		1.0
510	16		83		0.994512
511	83			16	0.994512
512	83			16	0.994512
514	16	83			0.994512
515		16	16		0.988813
659	80		20		0.995493
827		40	60		1.0
899		50		50	1.0
903	50		50		1.0
907		87		12	0.992554
908		50	50		1.0
909	50			50	1.0
1070		18		81	0.999994
1107			88	11	0.923564
1136		25		75	0.996473
1138		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain