SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9373

Length: 735 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9373

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] gb\|AAK76494.1\| putative helicase [Arabidopsis thaliana] gb\|AAM15033.1\| putative helicase [Arabidopsis thaliana] gb\|AAD17447.2\| putative helicase [Arabidopsis thaliana] gb\|AAM14300.1\| putative helicase [A	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	dna-binding protein smubp-2-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	87%
Blast2go	Thiamine metabolism	00730	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA helicase, putative	IPR004483	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
351		14		85	0.993533
368	85	14			0.993533
370			85	14	0.993533
371	85			14	0.993533
421	83		16		0.994512
633			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain