SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9126

Length: 931 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9126 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TWK5_VITVI	-	-	54%
FL-Next	sp=Galactinol--sucrose galactosyltransferase; Oryza sativa subsp. japonica (Rice).	-	-	56%
Blast2go	stachyose synthase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	galactose metabolic process	GO:0006012	Biological Process	0.0	71%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Raffinose synthase	IPR008811	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5VQG4

Fln msg: Distance to subject end: 552 aas, your sequence is shorter than subject: 221 - 783

Fln protein: MAPNLQTDVDMLLGRVEQPISLLDGKLFVHELPFLLDVPPNVVVSPFSSICSSKVADRTGCFLGFDTATSESRHVASLGKLKGIKFASIFRFKVWWTTHWVGNNGSDMEIETQFLLLDTPSKAASQNLGPHPYVLLLPIIDGQFRASLQPGEDDSVDVCLESCSDKVRGSSFRSCVYVHAGADPFDLMKDAMRAVRYHLGTFRLLEEKTPPGIINKFGWCT

Protein Length: 222

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCAGTTGTATCTTTATTTTCTCGCAGAGTTGAAGAAGTTAGTTGAGTGATTGAGAGTATCGACATTTTGAAGCCTGGTCCGACTGGTAAGGTTGAATTTTTGAGACTCCGTATCATATCTGCGGGTAGCCAGGAGCCCAATTTTGTATATTTTTTTCTAACTGTTTTCCCTCGAGTTCTCAAACTACTGTTAATTGCTTAGCCCAAAGTTTTGTTCGATTTCTTGTTTGAATTCTTTCA_-_ATGGCTCCCAATTTGCAAACCGATGTAGATATGTTGTTGGGCCGCGTAGAGCAGCCCATTTCTCTGTTAGACGGGAAGCTTTTTGTTCATGAGTTGCCTTTCTTGCTTGATGTCCCTCCCAATGTCGTTGTCTCGCCCTTTTCTTCCATTTGCAGTTCCAAGGTCGCTGATCGGACTGGGTGTTTCCTGGGATTCGACACAGCGACATCCGAGAGCAGGCACGTTGCCTCGCTCGGAAAATTGAAGGGCATTAAATTTGCCAGCATTTTCCGTTTCAAGGTCTGGTGGACGACCCACTGGGTTGGCAACAATGGTTCCGACATGGAGATCGAGACGCAATTCTTGCTTCTGGATACTCCGTCGAAGGCCGCCTCCCAGAATTTAGGCCCGCACCCATATGTCCTCCTGCTTCCCATCATAGACGGCCAATTCAGAGCCTCGCTGCAACCCGGAGAAGACGACAGCGTGGACGTGTGCCTGGAGTCTTGTTCCGACAAGGTCCGGGGTTCGAGTTTCCGGAGCTGCGTATACGTGCACGCCGGGGCGGATCCTTTTGATCTCATGAAGGACGCGATGCGGGCGGTGAGGTACCATTTGGGGACCTTCAGACTTCTAGAGGAGAAGACCCCGCCAGGGATCATCAACAAGTTCGGTTGGTGCACGT

Fln Alignment:

Contig9126___MAPNLQTDVDMLLGRV-------EQPISLLDGK-LFVHELPFLLDXXXXXXXXXXXSIC--SSKVADRTGCFLGFDTATSESRHVASLGKLKGIKFASIFRFKVWWTTHWVGNNGSDMEIETQFLLLDTPSKAASQNLGPHPYVLLLPIIDGQFRASLQPGE-DDSVDVCLESCSDKVRGSSFRSCVYVHAGADPFDLMKDAMRAVRYHLGTFRLLEEKTPPGIINKFGWCT
Q5VQG4______________MAPNLSKAKDDLIGDVVAVDGLIKPPRFTLKGKDLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILDQ-SGTKSSPTGPRPYVLLLPIVEGPFRACLESGKAEDYVHMVLESGSSTVRGSVFRSAVYLHAGDDPFDLVKDAMRVVRAHLGTFRLMEEKTPPPIVDKFGWCT

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
269	90		10		0.90298
270		10		90	0.90298
272	10		90		0.90298
274	10			90	0.90298
372	11		88		0.923564
383	88		11		0.923564
414	81		18		0.999994
583	77	11			0.968132
584	88		11		0.923564
586	87	12			0.992554
638		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain