SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8911

Length: 788 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	callose synthase 1 [Arabidopsis thaliana] sp\|Q9AUE0.2\|CALS1_ARATH RecName: Full=Callose synthase 1; AltName: Full=1,3-beta-glucan synthase; AltName: Full=Protein GLUCAN SYNTHASE-LIKE 6 gb\|AEE27855.1\| callose synthase 1 [Arabidopsis thaliana]	-	-	72%
FL-Next	sp=Callose synthase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	callose synthase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	82%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	82%
Blast2go	cell plate	GO:0009504	Cellular Component	82%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
532			80	20	0.995493
533	20	80			0.995493
534			20	80	0.995493
535			80	20	0.995493
536	80			20	0.995493
538		80		20	0.995493
540	80		20		0.995493
541	80			20	0.995493
544		16		83	0.994512
568	14		85		0.993533
572		85		14	0.993533
597	14		85		0.993533
602	85			14	0.993533
604			14	85	0.993533
605	85	14			0.993533
701		20		80	0.995493
713			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain