SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8729

Length: 1901 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8729

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TW99_PHYPA	-	-	1.0e-24	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	dsrna-binding protein	-	-	4.67357e-29	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	4.67357e-29	57%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	4.67357e-29	57%
Blast2go	RNA binding	GO:0003723	Molecular Function	4.67357e-29	57%
Blast2go	protein binding	GO:0005515	Molecular Function	4.67357e-29	57%
Blast2go	nuclear body	GO:0016604	Cellular Component	4.67357e-29	57%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Regulatory associated protein of TOR	IPR004083	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 124 aas, putative chimeric sequence, your sequence is shorter than subject: 234 - 346

Fln protein: MAERKGVANIVLPKSQLNEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEFLTSKEAEHDAARVALEDLNANGTTSLPNSVCEAGQWKNVLQQHAQKLKLPLPTYTCMKTGDDHSPKFISTVEVGGISCTGGIATTKKAAEMRAARRAFSVLQGQSCDYDLQGISCHRKREIELKEPSKEIQAAKPKLAKTCTESVSSDNSNLKDGMFVENQLEIHLQQEETK*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTGCTTTCTCTGTCGACGACTGGTCAACTAGTCATCATTTACCGCTATGTGTCATCCAGACAGGGACCTGGCGGGGCCTACCTATATATAGTGTTCATGGCTATGTGTGTCCTGCCTGTGTGTGCCCTAAAAAGAAAAGGACATTCTTTGAGAGGATTAGCAATATCAGCAGATCAACAGTGGACTGGCAATAAAGACTTAAATTCATAAACCCATCTCCCAAAAATTTCTATGGACTGAGAATAAGGACTTCAAACTCATAAACCCATCCTTCAGCAATCTCAGGGTTTCTGATTAAGGACTTAAAGCTCATAAACCATTCCCATCACCTCCACGGTTTCCTCTGTCCATATCCAGAGGGGGGATAGTGGACTGAGCTTTGGGAATTTACCCTCTACACTGAACCTACTACTCTGCCTACAACAGACATATCATACTGTAAATATAAATATTCATTTGAGCCCTCGAAAACAAACAAATAAGCACTATATTCCATAGCGTGCAGTGGCCGTAGCGAAGCTCCTCCCCTCGCTGGATATGCCAGCGTTTTCTACCTGATAGCGCCGAGGCCTTGAGAAAGACGCACATAACAACGTAACCCATATTGTATTTTACATCATTCGATTTTTGCCTGTAGTGTAACTGGTAATGCCTGTGCCTGTTCTGTTATGTTCTGGAATTCCAAGGAAGCGGCAACAAACAAGGAAGCGCGATATTCGCAGGTTAACCACCTTCCATATTATAATAACAAGTAGAAAAGAAAACGGGAGTATAGTTGGGCTATTTTGAATTGTAGCAAAAC_-_ATGGCTGAAAGAAAAGGTGTGGCAAACATTGTATTGCCCAAAAGCCAGTTAAATGAGTACACACAAAAATTATCCCTGCCTACACCTTCATATGATTTTACAAAAGAGGGCCCTTCACATAATCCAAGGTTCAGGGCGTCTGTTCTTGTTAATGGTAAAAGGTATGATTCTAAATCAGAATTTTTAACTAGTAAGGAGGCCGAGCATGATGCTGCACGAGTTGCTCTGGAAGACCTGAATGCCAATGGAACCACTTCTTTGCCTAATTCAGTGTGTGAGGCTGGGCAATGGAAGAATGTTCTTCAGCAGCATGCACAAAAATTGAAGCTTCCACTGCCTACTTATACTTGCATGAAAACTGGAGATGATCATTCTCCAAAATTTATCTCTACAGTGGAGGTGGGAGGAATTTCCTGCACAGGTGGTATTGCAACAACTAAAAAGGCCGCAGAAATGAGAGCTGCAAGAAGAGCTTTTTCGGTACTTCAAGGCCAATCATGTGATTATGATTTGCAAGGTATAAGCTGTCACAGGAAGAGGGAGATTGAACTCAAAGAACCCTCTAAGGAGATACAGGCTGCCAAGCCTAAGCTTGCCAAGACATGTACAGAATCAGTTAGCTCAGACAATTCTAATTTGAAGGATGGAATGTTTGTTGAGAATCAATTAGAGATACATCTACAGCAGGAGGAAACAAAATGA___AAGATGGAATGTTTGTTTAGAATCAATTAGAGATACATCTACAGCAGGAGGATACAAAATGAAAGGAAAGTGAGGACCAAGATAAGGAACGGAGAGCTTTGAACTATGCTTTGACCTTATGTGCTCACAATCAGAACTACATGGATTGGTTGTAGGTAGGGAATTCTTATTTGTTTATGACCTTTATTGAAGGTTACCATTTCTGAGTAAAATGATCTCCACTATTGTAAGGATTCCCTGTTAAACCACTCAGTGGTGATGCTCTATTCCTTATATGACTCAGGATATCGTTTGACAATTGACAAACTTTTCAGTGATTGATGATGATTAATTGACTGCTTCTTGACAACTTTATTAAGTTGCTTTAT

Fln Alignment:

Contig8729___KSQLNEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEFLTSKEAEHDAARVALEDLNANGTTSLPNSVCEAGQWKNVLQQHAQKLKLPLPTYTCMKTGDDHSPKFISTVEVGGISCTG
A9NUQ0______________KGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGLLPI-EEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
372		80		20	0.995493
377		20		80	0.995493
456			80	20	0.995493
655			25	75	1.0
790		33	66		0.997452
792	66			33	0.997452
793	66			33	0.997452
1040	16		83		0.994512
1068			14	85	0.993533
1069			85	14	0.993533
1070	85	14			0.993533
1071	85		14		0.993533
1074	14	85			0.993533
1076	85	14			0.993533
1077	85			14	0.993533
1081	85			14	0.993533
1082	85		14		0.993533
1083		85		14	0.993533
1090	14			85	0.993533
1365	80		20		0.995493
1477		20	80		0.999996
1478		10	90		0.90298
1479	80			20	0.999996
1480		30		70	1.0
1481			90	10	0.90298
1482		10	70	20	0.999998
1483	80		20		0.999996
1485		20		80	0.999996
1486		20	80		0.999996
1489			20	80	0.999996
1491		20		80	0.999996
1494	80			20	0.999996
1495		20	80		0.999996
1497	80	20			0.999996
1634	10	90			0.90298
1636			10	90	0.90298
1637			10	90	0.90298
1719	42	57			1.0
1823		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain