SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8654

Length: 729 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8654 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups	-	-	54%
FL-Next	tr=Putative uncharacterized protein Sb03g028300; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	60%
Blast2go	udp-glycosyltransferase family protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	69%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	69%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
353	33		66		0.997452
376	33	66			0.997452
402	66		33		0.997452
481		20	80		0.999996
482	90	10			0.90298
484	10		90		0.90298
555		11	88		0.923564
579		71	28		1.0
580		71		28	1.0
581	71		28		1.0
583	71	28			1.0
586		28		71	1.0
589	28			71	1.0
590			28	71	1.0
591	71		28		1.0
593	71	28			1.0
595		28		71	1.0
597	28			71	1.0
598		28		71	1.0
634		16		83	0.994512
635		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain