SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8649

Length: 494 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene8649
CGATGAAATTGATGCTCTCGCAGGGAAGCATGCAATTGTTGATCGTGAGCGAAGGTCCACTTTTGAATCGCTGTTATCACAGTTGGATGGGGATGTGGAGAACACATATGTTGAAAGGTACTCTCTAAGAGAGGCAGTAATTCTGATTTGTGCAACAAATCGGCCTGATGAACTAGAGGAGAGTTTTCTTCAACGTGGGCGCATAGATCGTGAACTCTATGTAGGTATGCCTGGAGAAAAGGAGCGTGTATCAATTTTTTCTGTTCACAGTAAAGGAAAACATTTAGCGAAGGATGTGGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGAGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTAAGGAAGGGTCACAATGAAATATGTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGTGTAGTCCTTACAGAGAAAGAGCAGCAAATGCATG

Ace file of the UniGene sp_v2.0_unigene8649

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative FtsH protease [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	cell division protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	75%
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	75%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	75%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL95

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 164 - 1036

Fln protein: DEIDALAGKHAIVDRERRSTFESLLSQLDGDVENTYVERYSLREAVILICATNRPDELEESFLQRGRIDRELYVGMPGEKERVSIFSVHSKGKHLAKDVDFKKLVFRTIGYSGADIRNLVNESGIMAVRKGHNEICQQDIIDVLDKQLFESMGVVLTEKEQQMH

Protein Length: 165

Fln nts: CGATGAAATTGATGCTCTCGCAGGGAAGCATGCAATTGTTGATCGTGAGCGAAGGTCCACTTTTGAATCGCTGTTATCACAGTTGGATGGGGATGTGGAGAACACATATGTTGAAAGGTACTCTCTAAGAGAGGCAGTAATTCTGATTTGTGCAACAAATCGGCCTGATGAACTAGAGGAGAGTTTTCTTCAACGTGGGCGCATAGATCGTGAACTCTATGTAGGTATGCCTGGAGAAAAGGAGCGTGTATCAATTTTTTCTGTTCACAGTAAAGGAAAACATTTAGCGAAGGATGTGGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGAGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTAAGGAAGGGTCACAATGAAATATGTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGTGTAGTCCTTACAGAGAAAGAGCAGCAAATGCATG

Fln Alignment:

Contig8649___DEIDALAGKHAIVDRERRSTFESLLSQLDGDVENTYVERYSLREAVILICATNRPDELEESFLQRGRIDRELYVGMPGEKERVSIFSVHSKGKHLAKDVDFKKLVFRTIGYSGADIRNLVNESGIMAVRKGHNEICQQDIIDVLDKQLFESMGVVLTEKEQQMH
B8LL95______________DEIDALAGKNVNDDRERTSTFEQLLSQLDGDVDDTNVERYSLRQAVILICATNRPDELDERLLQPGRIDRELYIGLPGEKDRVSIFSVHSQGRRLAKDVDFKKLAFRTIGYSGADIRNLVNESGIMAVRKGHDEIFQQDIIDVLDKQLFESMGLVLSEDEQKIH

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
312		85		14	0.993533
320	12	87			0.992554
321	12	87			0.992554
322			87	12	0.992554
324	87			12	0.992554
393	14		85		0.993533
409		11	88		0.923564
486			75	25	0.996473
487		75		25	0.996473
493		66		33	0.997452
494	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain