SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8569

Length: 1731 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8569

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9RUY1_RICCO	-	-	62%
FL-Next	tr=Sulfate transporter, putative; Ricinus communis (Castor bean).	-	-	67%
Blast2go	sulfate transporter	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	molybdate ion transport	GO:0015689	Biological Process	77%
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	molybdate ion transmembrane transporter activity	GO:0015098	Molecular Function	77%
Blast2go	sulfate transmembrane transporter activity	GO:0015116	Molecular Function	77%
Blast2go	vacuole	GO:0005773	Cellular Component	77%
Blast2go	endomembrane system	GO:0012505	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sulphate transporter	IPR011547	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RUY1

Fln msg: your sequence is longer than subject: 526 - 464

Fln protein: MGVESNKSRGWSMIVLELRQKIGDILDSAYFFDYQSKLPVTNIWKTTKAVTARLLSAPPQDGSTSGEYSSPPPFLSRLKRNLTCKAGWSEVSGSLGDLGTFVPIVIALTLVNGLDLGTTLIFTGLYNVVTGILWGVPMPVQPMKSIAAVAISEGEHLAIPEIMAAGICTAGVLFVLGVTGLMGFCYRWIPFPVVRGVQLSQGLSFAFTAVKYIRQNQNFVTGKSEGDRPWVGWDGLVLALVCFCFIVLVTGSGDGNGESQGEAGNGDSATDSRIPNRYLRIVNSIPSALIVFLAGIAICIVRDPEILKQLKLGPSKIHVVKISKEDWKTGFIRAAIPQIPLSVLNSVIAVCKLSTDLFPQKVVTATSVSASVGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGTAKMVLGLLLGSSLLKILTQFPVGLLGVLLFFSGVELAMASRDMNTKQDSFVMLVCAAVSLTGSSAALGFGCGIALYVLLKLRELNCDNCIQIFHSTRGKSMETMAQGQGSNI*

Protein Length: 527

Fln nts: _-_ATGGGAGTGGAATCAAATAAATCTCGAGGGTGGTCAATGATAGTCCTAGAGCTCCGCCAGAAGATTGGGGATATTCTTGACAGTGCATATTTTTTCGATTACCAGAGCAAGCTACCTGTAACAAATATATGGAAGACAACAAAAGCTGTCACAGCAAGGCTTCTGTCTGCACCCCCACAAGATGGGTCAACTTCCGGTGAATACTCATCTCCTCCACCATTCCTGTCAAGGCTGAAGCGGAATCTGACATGCAAGGCAGGATGGTCTGAAGTCAGCGGGTCACTTGGAGATTTGGGGACATTCGTCCCAATAGTAATTGCCCTGACACTCGTCAATGGACTCGATCTGGGCACCACTCTGATCTTCACAGGATTATACAACGTGGTCACAGGGATTCTCTGGGGAGTTCCAATGCCTGTTCAGCCCATGAAATCCATTGCTGCAGTGGCAATAAGTGAGGGGGAGCACCTGGCGATTCCAGAGATAATGGCTGCAGGTATTTGCACTGCTGGGGTTCTTTTTGTATTGGGTGTTACGGGTTTGATGGGTTTTTGTTATCGTTGGATTCCTTTTCCTGTTGTTAGAGGTGTACAGTTATCACAGGGTTTATCTTTTGCCTTTACAGCGGTAAAATACATAAGACAAAACCAGAATTTTGTCACTGGGAAGTCAGAGGGGGATAGGCCTTGGGTAGGGTGGGATGGTCTTGTTTTAGCACTTGTTTGTTTCTGTTTCATTGTGCTGGTAACTGGGTCTGGGGATGGAAATGGAGAAAGCCAAGGTGAGGCTGGAAATGGAGATTCTGCTACAGATAGCAGGATTCCGAATAGATATCTGAGAATTGTGAATTCTATTCCCTCTGCCCTTATTGTGTTTCTAGCTGGGATTGCCATCTGTATTGTGAGAGATCCTGAGATTCTGAAACAGTTGAAGCTAGGCCCATCGAAAATTCATGTTGTTAAGATATCTAAAGAAGATTGGAAGACAGGGTTCATTAGGGCTGCAATACCGCAAATACCCTTATCTGTCTTGAACTCTGTTATAGCAGTCTGCAAATTATCTACAGATCTGTTTCCACAAAAGGTAGTGACTGCAACTTCCGTGTCTGCAAGTGTGGGACTGATGAATCTGGTGGGTTGTTGGTTTGGGGCCATGCCTGTTTGTCATGGGGCAGGAGGGCTTGCTGGTCAGTACCGTTTTGGGGCAAGAAGTGGAGCCTCTGTGGTGTTCTTGGGTACTGCTAAGATGGTTTTAGGCCTGCTTCTGGGTAGTTCCCTGCTGAAAATCCTGACCCAGTTCCCTGTTGGGTTGCTAGGAGTGTTGCTGTTCTTCTCTGGTGTAGAATTAGCCATGGCTTCTCGCGACATGAATACGAAGCAGGATTCGTTTGTAATGCTTGTCTGCGCTGCCGTTTCTCTCACTGGATCCAGTGCAGCGCTTGGATTTGGATGTGGAATTGCCCTGTATGTTCTTCTAAAGCTCAGGGAATTGAATTGTGATAACTGCATACAGATTTTCCATTCTACTAGAGGGAAATCCATGGAGACAATGGCTCAGGGGCAAGGGTCAAACATTTAA___ATGTGTAAATATGTAACTTTGATTGACAGCTGCAAGAGACTGAATCTCTTTGGCAGTCGTATCTTGAAAATAGTTTGAATTTCTGTGCTGTTTGTATCCTCCGTGGATATGCCAAATAGATTTATCCAGTGGTCTCAATAGTACTTGGATTTC

Fln Alignment:

Contig8569___SEVSGSLGDLGTFVPIVIALTLVNGLDLGTTLIFTGLYNVVTGILWGVPMPVQPMKSIAAVAISEGEHLAIPEIMAAGICTAGVLFVLGVTGLMGFCYRWIPFPVVRGVQLSQGLSFAFTAVKYIRQNQNFVTGKSEGDRPWVGWDGLVLALVCFCFIVLVTGSGDGNGESQGEAGNGDSATDSRIPNRYLRIVNSIPSALIVFLAGIAICIVRDPEILKQLKLGPSKIHVVKISKEDWKTGFIRAAIPQIPLSVLNSVIAVCKLSTDLFPQKXXXXXXXXXXXGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGTAKMVXXXXXXXXXXKILTQXXXXXXXXXXXXXXXXXAMASRDMNTKQDSFVMLVCAAVSLTGSSAALGFGCGIALYVLLKLRELNC
B9RUY1______________SELSGAVGDLGTFIPIVLTLTLVSHLDLSTTLIFTSLYNISTGLLFGIPMPVQPMKSIAAVAVSELPHLTTAQIATAGATTAATLLILGATGLMSFFYKFIPLPVVRGVQLSQGLSFAFSAIKYIRYNQDFITSKSTSPRSWLGLDGLVLAISALLFLIFTTGSG-ADHPSMSDDDQSLTRSSQRRVNRRLRILSAIPAALIVFLFGLVLCFIRDPSIIKDLKFGPSRIQVLKIAWEDWKIGFLRGAIPQIPLSVLNSVIAVCKLSTDLFPDRELSATKVSISVGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGIGKLVIGLVFGNSFIRILNQFPIGILGVLLLFAGIELAMASKDMNTKEESFVMLVCAAVSMTGSSAALGFGCGILLYLLLKLRSMDC

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
183		20		80	0.995493
244	20	80			0.995493
274	83		16		0.994512
275			83	16	0.994512
278			83	16	0.994512
279			83	16	0.994512
280	16			83	0.994512
288	83	16			0.994512
289			83	16	0.994512
290	83		16		0.994512
292		16		83	0.994512
293	16			83	0.994512
294		16	83		0.994512
295			83	16	0.994512
296		16	83		0.994512
297	16		83		0.994512
316	85		14		0.993533
349	14		85		0.993533
430	90			10	0.90298
431	90			10	0.90298
432	90	10			0.90298
433			10	90	0.90298
510	10			90	0.90298
511		11	88		0.923564
512			88	11	0.923564
513		11	88		0.923564
664	33		66		0.997452
785		33		66	0.997452
790		66		33	0.997452
1106	66		33		0.997452
1200		20		80	0.995493
1201			20	80	0.995493
1204	20		80		0.995493
1205		20	80		0.995493
1206		20	80		0.995493
1207		80		20	0.995493
1208	80			20	0.995493
1209	80		20		0.995493
1211	80	20			0.995493
1212	62	25		12	1.0
1213		12	87		0.992554
1215		25	62		1.0
1216	12		87		0.992554
1217	62	25		12	1.0
1218			87	12	0.992554
1219	12	75		12	0.975346
1220	12	87			0.992554
1221	12			75	0.975346
1224		12	75		0.975346
1231		12		87	0.992554
1232	12	87			0.992554
1233		12		87	0.992554
1235	12	12	75		0.975346
1236	12		87		0.992554
1295		88	11		0.923564
1296		88		11	0.923564
1297	88	11			0.923564
1300			11	88	0.923564
1301	11	88			0.923564
1307			11	88	0.923564
1309		12	87		0.992554
1312		12		87	0.992554
1313	12		87		0.992554
1389		6		93	0.999453
1431	95			4	0.995482
1712		11	88		0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain