SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8450

Length: 823 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8450 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tubulin-tyrosine ligase [Arabidopsis thaliana] gb\|AAT35236.1\| At1g77550 [Arabidopsis thaliana] dbj\|BAE98770.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE35992.1\| tubulin-tyrosine ligase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	74%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tubulin--tyrosine ligase.	EC:6.3.2.25	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	84%
Blast2go	tubulin-tyrosine ligase activity	GO:0004835	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Tubulin-tyrosine ligase	IPR004344	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
368	66		33		0.997452
412			33	66	0.997452
440		25		75	0.996473
500	81			18	0.999994
501		81	18		0.999994
503	81		18		0.999994
504	81			18	0.999994
505		81	18		0.999994
506	18			81	0.999994
508	18	81			0.999994
509			18	81	0.999994
511		18	81		0.999994
512	18		81		0.999994
514	81		18		0.999994
515			18	81	0.999994
518	18		81		0.999994
519		18		81	0.999994
521	18			81	0.999994
522		18	81		0.999994
527	87			12	0.992554
530		12		87	0.992554
531		12	87		0.992554
538	85			14	0.993533
539			14	85	0.993533
543			14	85	0.993533
546			14	85	0.993533
547		14		85	0.993533
548	85	14			0.993533
549	14	85			0.993533
553	85	14			0.993533
555	85	14			0.993533
557		14		85	0.993533
599		16		83	0.994512
600		16	83		0.994512
601		16	83		0.994512
602	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain