SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8297

Length: 2648 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene8297
GCGGTATATAAAGGAGGCCACTGATACGCCATGGATAATTAAACACTGGCAATTGCCTGCGTCTGCTTCAATTGAAGCTTTTCTGCTCGCCAATCAATATGGCAATTGCAAGCAGGGCAGGAGTTGCACCCATCCTTCAAGTAGACTGTCATTTCACCCATTTCAATTCAATGACTGAATTGGGTTCTCGGAATAGTACGATGTTTCAGTCTGCAATTCCCTGCTCATTTCGACAGATTAGGGCGACCACTAAAAGAAAGCGTTGTGTCTTGTTTGCTAAGCTAAGTAATTCCGATGGAGAAAAGGGGAAAAATGTGAAGGCAGCTGTGGAGATTGCTTCAAAGAGTGGATTCCCAGCTGAGAAACCTCCTACACCGTTGCTCGACACCGTTAATTATCCAGTACACTTAAAGAATCTCTCTATACAGGATCTAGAGCAACTGGCCGCAGAAATTAGAGCAGAACTTGTGTTCGGTGTGGCAAAAACTGGAGGCCACCTGGGAGGTAGCCTGGGTGTGGTAGATCTAACAGTGGCTCTTCACCATGTCTTTGATTCTCCAGAGGATAAGATTATATGGGATGTTGGTCACCAGTCATATCCACACAAGATTTTGACAGGGAGAAGATCCAAAATGCATACAATCAGACAGACCTCTGGTTTGGCCGGATTTCCCAAACGGGACGAAAGCAAATACGATGCTTTTGGCGCTGGACATAGTTCTACCAGTATCTCCGCTGGACTCGGTATGGCAGTTGGGAGAGATTTACTGAAGAAAAAAAACCATGTGGTGGCCGTGATTGGGGATGGAGCCATGACAGCAGGACAAGCTTACGAGGCTATGAATAATTCAGGATATCTGGAATCCAATCTTATCATAATTCTTAATGATAATAAGCAAGTTTCGCTGCCAACTGCCACACTAGACGGAGCTGCGCCGCCCGTAGGAGCACTTACCAGGGCTCTCACAAAGCTCCAGTCCAGCAAAAAACTTCGCAAACTCAGAGAAGCCGCCAAGGGTCTCACGAAGCAGATAGGTGGGCCAACTCATGAAGTGGCATCGAAAGTTGATAAGTATGCAAGGGGTCTTATCAGCCCAGCAGGTTCCTCGTTGTTTGACGAGCTAGGTCTTTATTACATTGGACCTGTGGATGGGCACAACATTGAAGACATGGTGACAATTTTAGAGAAGATTAAAAGCATGCCGGCTACGGGACCCGTGCTGATTCACTTGGTGACAGAGAAAGGAAAGGGTTACCCTCCAGCGGAGGAAGCTGCAGACAAATTACATGGTGTGGTGAAGTTCGATCCAGTTACGGGCAAACAATTCAAGTCAAAAAGTTCCGTTCTGAGCTATACACAGTACTTTGCAGAAGCTCTGATAGCAGAAGCGGAAGTAGACAGCAAAATTGTGGGTATTCATGCTGCCATGGGCGGAGGCACAGGACTTAATTATTTCCAAAAGAAGTTCCCAGAACGCTGCTTCGACGTAGGAATAGCAGAACAACACGCGGTCACATTTGCTGCAGGCCTAGCTACAGAAGGCCTGAAACCTTTCTGTGCAATTTATTCTACTTTCCTGCAACGCGGTTATGATCAGGTAGTTCACGATGTGGATCTGCAAAAGCTGCCGGTGCGTTTTGCAATGGATAGGGCCGGACTGGTTGGGGCAGACGGTCCTACTCATTGTGGTTCTTTTGATGTGGCCTATATGGCCTGCCTGCCCAACATGATTGTAATGGCTCCGTCAGACGAGGTAGAACTGATGCACATAGTTGCAACCGCTGCAGCAATTGACGATCGACCCAGCTGTTTCAGGTTCCCTAGGGGCAACGGAGTAGGGTTGTCAAATTTGCCCCTAAATAACAAGGGTGTTCCACTTGAGATTGGCAAAGGTCGCATTCTGGTAGAAGGCACCCGAGTTGCGATTCTAGGGTTTGGTACGATTATACAGAATTGTCTTGCAGCTGGAAAAATCCTAAATGAACAAGCTGGCATATCAGTCACCATTGCAGATGCTCGTTTCTGCAAGCCTTTGGATGGAGATTTGATCAAACGGTTGGCTAAAGAGCACGAGATCCTATTGACTGTGGAGGAAGGATCCATTGGGGGTTTTGGATCCCATGTCTCCCATTTCCTGGCTTTGAACGGGCTACTTGATGGGAAGCTTAAGTGGAGGGCAATGGTGTTACCAGATAGATACATTGATCATGGAGCTCCCAAAGATCAAATCGAAGAAGCAGGTTTGACTCCAGAGCATATTGCAGCTACCATAATGTCCCTCCTGGGCAAGCCTCATGATGCTCTTCTGAAGCACCGATAAATGCATCATGTTTTAAGGGGACAAGCGTAGATTTTGCTTATCCTATCAATAAGGCTATGCAGCAAGTTGGAAGACTCTGGTCAGCCATGAGACCCTTTATCTGTCAAATGTAAATCTGTTTACAGTTTCTAATAATAAAGAAGATAATATCTTGTTTTAAGAGCATTTAGCGTTGACAATACACTGATTAAGAAAATTCACACGTTTAGTCGTGTGTAGCAATATGTAAATGTCAACGAAGAAGCAAAACTCACACGGTTTAGTCGTGTGTAGCCATATGTAAATATCAGTAACAAATAATTAATAGAGTGATTAAATAAATATTAT

Ace file of the UniGene sp_v2.0_unigene8297

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type II n=3 Tax=Pinaceae RepID=A7LA01_PICAB	-	-	92%
FL-Next	tr=Putative 1-D-deoxyxylulose 5-phosphate synthase type 2; Pinus densiflora (Japanese red pine).	-	-	98%
Blast2go	1-deoxyxylulose 5-phosphate synthase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on the aldehyde or oxo group of donors, With a disulfide as acceptor.	EC:1.2.4.-	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	90%
Blast2go	1-deoxy-D-xylulose-5-phosphate synthase.	EC:2.2.1.7	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	90%
Blast2go	Biosynthesis of terpenoids and steroids	01062	90%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	90%
Blast2go	Biosynthesis of plant hormones	01070	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	thiamine biosynthetic process	GO:0009228	Biological Process	90%
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	90%
Blast2go	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	GO:0016624	Molecular Function	90%
Blast2go	1-deoxy-D-xylulose-5-phosphate synthase activity	GO:0008661	Molecular Function	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Deoxyxylulose-5-phosphate synthase	IPR005477	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B9U4U0

Fln msg:

Fln protein: MAIASRAGVAPILQVDCHFTHFNSMTELGSRNSTMFQSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEIASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLAAEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNYFQKKFPERCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPSCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR*

Protein Length: 742

Fln nts: GCGGTATATAAAGGAGGCCACTGATACGCCATGGATAATTAAACACTGGCAATTGCCTGCGTCTGCTTCAATTGAAGCTTTTCTGCTCGCCAATCAAT_-_ATGGCAATTGCAAGCAGGGCAGGAGTTGCACCCATCCTTCAAGTAGACTGTCATTTCACCCATTTCAATTCAATGACTGAATTGGGTTCTCGGAATAGTACGATGTTTCAGTCTGCAATTCCCTGCTCATTTCGACAGATTAGGGCGACCACTAAAAGAAAGCGTTGTGTCTTGTTTGCTAAGCTAAGTAATTCCGATGGAGAAAAGGGGAAAAATGTGAAGGCAGCTGTGGAGATTGCTTCAAAGAGTGGATTCCCAGCTGAGAAACCTCCTACACCGTTGCTCGACACCGTTAATTATCCAGTACACTTAAAGAATCTCTCTATACAGGATCTAGAGCAACTGGCCGCAGAAATTAGAGCAGAACTTGTGTTCGGTGTGGCAAAAACTGGAGGCCACCTGGGAGGTAGCCTGGGTGTGGTAGATCTAACAGTGGCTCTTCACCATGTCTTTGATTCTCCAGAGGATAAGATTATATGGGATGTTGGTCACCAGTCATATCCACACAAGATTTTGACAGGGAGAAGATCCAAAATGCATACAATCAGACAGACCTCTGGTTTGGCCGGATTTCCCAAACGGGACGAAAGCAAATACGATGCTTTTGGCGCTGGACATAGTTCTACCAGTATCTCCGCTGGACTCGGTATGGCAGTTGGGAGAGATTTACTGAAGAAAAAAAACCATGTGGTGGCCGTGATTGGGGATGGAGCCATGACAGCAGGACAAGCTTACGAGGCTATGAATAATTCAGGATATCTGGAATCCAATCTTATCATAATTCTTAATGATAATAAGCAAGTTTCGCTGCCAACTGCCACACTAGACGGAGCTGCGCCGCCCGTAGGAGCACTTACCAGGGCTCTCACAAAGCTCCAGTCCAGCAAAAAACTTCGCAAACTCAGAGAAGCCGCCAAGGGTCTCACGAAGCAGATAGGTGGGCCAACTCATGAAGTGGCATCGAAAGTTGATAAGTATGCAAGGGGTCTTATCAGCCCAGCAGGTTCCTCGTTGTTTGACGAGCTAGGTCTTTATTACATTGGACCTGTGGATGGGCACAACATTGAAGACATGGTGACAATTTTAGAGAAGATTAAAAGCATGCCGGCTACGGGACCCGTGCTGATTCACTTGGTGACAGAGAAAGGAAAGGGTTACCCTCCAGCGGAGGAAGCTGCAGACAAATTACATGGTGTGGTGAAGTTCGATCCAGTTACGGGCAAACAATTCAAGTCAAAAAGTTCCGTTCTGAGCTATACACAGTACTTTGCAGAAGCTCTGATAGCAGAAGCGGAAGTAGACAGCAAAATTGTGGGTATTCATGCTGCCATGGGCGGAGGCACAGGACTTAATTATTTCCAAAAGAAGTTCCCAGAACGCTGCTTCGACGTAGGAATAGCAGAACAACACGCGGTCACATTTGCTGCAGGCCTAGCTACAGAAGGCCTGAAACCTTTCTGTGCAATTTATTCTACTTTCCTGCAACGCGGTTATGATCAGGTAGTTCACGATGTGGATCTGCAAAAGCTGCCGGTGCGTTTTGCAATGGATAGGGCCGGACTGGTTGGGGCAGACGGTCCTACTCATTGTGGTTCTTTTGATGTGGCCTATATGGCCTGCCTGCCCAACATGATTGTAATGGCTCCGTCAGACGAGGTAGAACTGATGCACATAGTTGCAACCGCTGCAGCAATTGACGATCGACCCAGCTGTTTCAGGTTCCCTAGGGGCAACGGAGTAGGGTTGTCAAATTTGCCCCTAAATAACAAGGGTGTTCCACTTGAGATTGGCAAAGGTCGCATTCTGGTAGAAGGCACCCGAGTTGCGATTCTAGGGTTTGGTACGATTATACAGAATTGTCTTGCAGCTGGAAAAATCCTAAATGAACAAGCTGGCATATCAGTCACCATTGCAGATGCTCGTTTCTGCAAGCCTTTGGATGGAGATTTGATCAAACGGTTGGCTAAAGAGCACGAGATCCTATTGACTGTGGAGGAAGGATCCATTGGGGGTTTTGGATCCCATGTCTCCCATTTCCTGGCTTTGAACGGGCTACTTGATGGGAAGCTTAAGTGGAGGGCAATGGTGTTACCAGATAGATACATTGATCATGGAGCTCCCAAAGATCAAATCGAAGAAGCAGGTTTGACTCCAGAGCATATTGCAGCTACCATAATGTCCCTCCTGGGCAAGCCTCATGATGCTCTTCTGAAGCACCGATAA___ATGCATCATGTTTTAAGGGGACAAGCGTAGATTTTGCTTATCCTATCAATAAGGCTATGCAGCAAGTTGGAAGACTCTGGTCAGCCATGAGACCCTTTATCTGTCAAATGTAAATCTGTTTACAGTTTCTAATAATAAAGAAGATAATATCTTGTTTTAAGAGCATTTAGCGTTGACAATACACTGATTAAGAAAATTCACACGTTTAGTCGTGTGTAGCAATATGTAAATGTCAACGAAGAAGCAAAACTCACACGGTTTAGTCGTGTGTAGCCATATGTAAATATCAGTAACAAATAATTAATAGAGTGATTAAATAAATATTAT

Fln Alignment:

Contig8297___MAIASRAGVAPILQVDCHFTHFNSMTELGSRNSTMFQSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEIASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLAAEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRAXXXXXXXXXXXXXXEAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNYFQKKFPERCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPSCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR
B9U4U0______________MAIASRAGVAPILQVDCPFTHFNSMTELGSRNSMLFLSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEVASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLATEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNFFQKKFPERCLDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPCCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
88		10		90	0.999898
89	20	80			1.0
93	90		10		0.999898
94	90		10		0.999898
136		89		10	0.999919
150		15		84	1.0
199	78		21		1.0
285	71		28		1.0
384		16		83	0.994512
427		83	16		0.994512
842		11		88	0.923564
1092		83		16	0.994512
1113	20		80		0.995493
1125	80		20		0.995493
1245	88			11	0.923564
2214	86		4		0.999642
2414	87		4	8	0.999414
2488	18			81	0.999994
2489	18			81	0.999994
2490	18			81	0.999994
2492	18		81		0.999994
2493	10	90			0.90298
2503	71		28		1.0
2506		85	14		0.993533
2526	20		80		0.995493
2547			20	80	0.995493
2626	75		25		0.996473
2631			75	25	0.996473
2632	25			75	0.996473
2635	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain