SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8127

Length: 1240 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8127

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		77%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		77%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		77%
Blast2go	Glycosaminoglycan degradation	00531		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	77%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	77%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	77%
Blast2go	apoplast	GO:0048046	Cellular Component	77%
Blast2go	cell wall	GO:0005618	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg:

Fln protein: MGLVGCQQRGHIMHRCLLNSVVMLCTLAVGCQSAAFNDFFYPSWAADHVMSQGQLLKLKLDNTSGAGFASKSSYIFGKVNVQIKLIPGDSAGTVTAFYMSSQGDEHDEFDFEFLGNTSGQPYTVQTNVYSKGSGNREQRMFLWFDPTADFHSYSFLWNRQQVVFFVDDVPTRVFRNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGRVKTDWNHAPFVSTYKNFSIDACEASSNTSCSSWWDAPAYASLDAKQRRKLKWVQEEYITYDYCKDSARFATPPAECSA*

Protein Length: 288

Fln nts: TATATGGGGATCGTCTTCCTTTGAAATTCCATACTTTTTGTTTGAAATTTCCAGCCTTGAGG_-_ATGGGATTGGTAGGTTGCCAACAACGGGGGCATATCATGCACCGCTGTCTTCTCAATAGTGTTGTAATGTTGTGCACCCTGGCCGTGGGATGTCAATCTGCAGCTTTCAACGATTTCTTCTACCCTAGTTGGGCTGCTGATCATGTTATGTCTCAAGGGCAGCTGCTCAAACTCAAGCTCGATAACACTTCAGGTGCAGGGTTTGCTTCCAAGAGCTCATACATATTTGGAAAAGTGAATGTGCAGATTAAACTCATTCCTGGGGACTCTGCTGGCACCGTTACTGCTTTCTATATGTCTTCCCAAGGGGATGAGCACGATGAATTTGACTTTGAATTTTTGGGGAATACTTCTGGACAGCCATACACTGTGCAGACCAATGTTTATTCAAAGGGGAGTGGTAATAGGGAGCAGCGTATGTTCTTATGGTTTGACCCCACTGCGGATTTCCATTCCTACTCCTTTCTCTGGAATCGTCAGCAAGTTGTTTTCTTTGTGGACGATGTGCCGACACGGGTATTTCGGAACAATGAGAAAGTGGGAGTTCCGTATCCTCAATCTCAACCAATGGGCGTATACTCGTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCGCGTAAAGACCGATTGGAACCACGCACCTTTCGTTTCAACATACAAGAATTTCAGCATTGATGCATGTGAAGCTTCCTCGAACACCAGCTGCTCTTCGTGGTGGGATGCGCCTGCTTACGCCTCGCTTGACGCAAAGCAGAGGCGGAAACTGAAGTGGGTACAAGAGGAATACATAACTTACGATTACTGCAAAGATTCAGCTAGGTTTGCCACGCCTCCAGCAGAATGTAGTGCGTAA___AGTAGCCTCTCTTTATTCGCATCATGTCGCGATCATATAAATAATAATATATTTCTAAATCTATTAGATTTCATTCCTTTCAGTTTGTAGATGGTCATCACACAGAAGTAAGTTTTTGTTAGCGGCGCTGCAGAAGCAGGCTGTGTGTCATTGCGAGGTATAGAGGATTTAGAAGATAACATAGGCTTTCTGTCACTTTTCCACAGTCACCCATTCATGGTTTTAGGTGTTTTCAAATATTTTGGCTGTGGAAGTACTGTATTGGGGGAAATCCAAGTAATATAAGATTTAGTGACGGCCACTTTTTCTTCTTCTCG

Fln Alignment:

Contig8127___MGLVGCQQRGHIMH-RCLLNSVVMLCTLAVGCQSAAFNDFFYPSWAADHVMSQGQLLKLKLDNTSGAGFASKSSYIFGKVNVQIKLIPGDSAGTVTAFYMSSQGDEHDEFDFEFLGNTSGQPYTVQTNVYSKGSGNREQRMFLWFDPTADFHSYSFLWNRQQVVFFVDDVPTRVFRNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGRVKTDWNHAPFVSTYKNFSIDACEASSNTSCSSWWDAPAYASLDAKQRRKLKWVQEEYITYDYCKDSARFATPPAEC
D5A9T0______________MGLVGREEGGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAEC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
155	10			90	0.90298
158	90			10	0.90298
834		87		12	0.992554
1147	25			75	1.0
1148	75		25		1.0
1149			71	28	1.0
1182			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain