SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8049

Length: 782 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8049

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9T4H6_RICCO	-	-	2.0e-38	66%
FL-Next	tr=Trehalose-6-phosphate synthase, putative; Ricinus communis (Castor bean).	-	-	0.0	64%
Blast2go	trehalose-phosphate phosphatase-like	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	0.0	77%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
147	75			25	0.996473
148			75	25	0.996473
226		33		66	0.997452
266	75		25		0.996473
267	75			25	0.996473
271	75	25			0.996473
272	75			25	0.996473
273	75			25	0.996473
284		25	75		0.996473
285	25		75		0.996473
301			25	75	0.996473
362		16	83		0.994512
363	80		20		0.995493
369	20			80	0.995493
370		20		80	0.995493
372	80	20			0.995493
373	20	80			0.995493
440		40		60	1.0
445		40		60	1.0
463	80			20	0.995493
488			75	25	0.996473
499	33			66	1.0
643			40	60	1.0
654	40		60		1.0
659		60	40		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain