SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8039

Length: 998 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8039 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9RW81_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	diacylglycerol kinase 5	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	82%
Blast2go	Glycerophospholipid metabolism	00564	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Phosphatidylinositol signaling system	04070	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	0.0	82%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
268	22		77		0.999999
332		25		75	1.0
672	90			10	0.90298
676	90		10		0.90298
678		90	10		0.90298
681		10		90	0.90298
682	10			90	0.90298
683			10	90	0.90298
687	10		90		0.90298
688		90	10		0.90298
689			10	90	0.90298
692	18			81	0.999994
694	81		18		0.999994
772	80		20		0.995493
799	60		40		1.0
849	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain