SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7927

Length: 1481 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7927 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydroquinone glucosyltransferase [Arabidopsis thaliana] sp\|Q9M156.1\|U72B1_ARATH RecName: Full=UDP-glycosyltransferase 72B1; AltName: Full=Arbutin synthase; AltName: Full=Probable hydroquinone glucosyltransferase pdb\|2VCE\|A Chain A, Characterization And En	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	hydroquinone glucosyltransferase-like	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	61%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	61%
Blast2go	response to toxin	GO:0009636	Biological Process	61%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT89

Fln msg: Separated hits, possible frame ERROR between 186 and 234, and overlapping frame ERROR between 287 and 284,

Fln protein: ELAIRLAEHHGLSITFISCKWMFSARLMALYSDRIASSGLDITFVQLPEVEIEGAQHMQLExxxxxxxxxxxxxxxxxLRFLVESGPPFSAFIxxxxCSTMYDVAADLGIPTYVFFTSNTAFLSFMLSIPKLVSEIPISFKDAEFPLEVPGILPIAGTDIPPPFRDRSDEAFYWVVLHSSCLWKVTGILINTFEEVEPETIKVIAEGKICNPTGPSRVPRLYPVGPLISSSPLEYNDKPVQDERVDCLKWLDKQPPSSVLFVSFGSGTALPRAQVTELAAGLEASGHRFLWVLRSPSSSFLSIEETNLSRLLPEGFENRTRDRGLVVASWAPQIPVLAHPSTGGFVSHCGWNSSLESISHGVPMICWPLFAEQRMNMFLLVNRLKVGIAAKMENDEFVRRDEVERAVRELMEGGEAWTVRARMRELKVKAVSTLEKGGSSYKAMAAAVSEWTTNANAKPSIAMMPDMSNGQKTNALMESLLM*

Protein Length: 484

Fln nts: GAGCTCGCCATCCGCCTTGCGGAGCACCATGGCCTCTCCATCACCTTCATTTCCTGCAAATGGATGTTCTCCGCTCGTCTCATGGCACTTTACTCGGACCGCATCGCATCCTCGGGTCTTGACATCACCTTCGTCCAGTTGCCGGAAGTGGAGATCGAAGGCGCACAACACATGCAGCTAGAAACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTCAGATTCCTTGTTGAATCTGGCCCGCCCTTCTCTGCTTTTATCATxxxxxxxxxCTGCTCCACTATGTACGATGTGGCCGCCGATTTGGGCATACCCACCTATGTATTCTTCACTTCCAATACTGCTTTTCTCTCTTTCATGTTATCTATCCCCAAGCTCGTCTCAGAGATTCCCATTTCGTTCAAGGACGCCGAGTTCCCATTAGAGGTTCCGGGAATTCTACCGATTGCTGGCACGGATATTCCGCCTCCGTTTCGTGACAGATCCGATGAAGCCTTTTACTGGGTCGTGCTCCACTCCTCGTGCCTGTGGAAAGTGACGGGAATTTTGATAAACACCTTCGAGGAAGTGGAGCCTGAAACGATCAAAGTTATTGCTGAAGGAAAGATATGTAATCCGACTGGGCCTTCTCGAGTTCCCCGCCTTTATCCGGTTGGGCCACTCATATCCTCGTCACCTCTTGAATACAATGACAAACCTGTCCAAGACGAAAGGGTTGATTGCCTCAAATGGTTAGACAAGCAACCGCCTTCGTCGGTTCTGTTCGTTTCATTCGGAAGCGGAACAGCGCTGCCGAGGGCGCAGGTGACCGAACTCGCGGCGGGACTGGAAGCAAGCGGACATCGTTTCCTGTGGGTGTTGCGTAGTCCGTCAAGCAGCTTTCTCTCTATCGAGGAGACAAACCTTTCCCGACTCTTACCCGAGGGATTCGAGAATCGAACCAGGGATCGGGGACTTGTTGTTGCTTCATGGGCGCCTCAGATTCCTGTTCTCGCTCACCCATCCACCGGCGGTTTTGTTTCTCACTGCGGTTGGAATTCTTCGCTAGAGAGCATCTCACATGGAGTTCCCATGATCTGTTGGCCCCTTTTTGCGGAGCAAAGGATGAACATGTTTTTGCTGGTTAACAGGTTGAAGGTGGGGATAGCAGCGAAGATGGAAAACGATGAATTTGTGAGGAGAGATGAAGTGGAGAGAGCAGTTAGGGAGTTGATGGAAGGAGGAGAGGCCTGGACGGTTAGGGCGAGAATGAGAGAATTGAAGGTGAAGGCCGTGAGTACATTGGAAAAAGGTGGCAGTTCATACAAAGCCATGGCCGCTGCAGTCTCTGAGTGGACAACAAATGCAAACGCAAAACCCTCGATCGCCATGATGCCTGATATGTCCAATGGGCAAAAAACAAATGCACTTATGGAGTCTCTACTGATGTAAGTAAATGCTTTTTACTGTACTTTTCCGTGGGAAA

Fln Alignment:

Contig7927___ELAIRLAEHHGLSITFISCKWMFSARLMALYSDRIASSGLDITFVQLP-EVEIEGAQHMQLETxxxxxxxxxxxxxxxxLRFLVESGPPFSAFIIDxFCSTMYDVAADLGIPTYVFFTSNTAFLSFMLSIPKLVSEIPISFKDAEFPLEVPGILPIAGTDIPPPFRDRSDEAFYWVVLHSSCLWKVTGILINTFEEVEPETIKVIAEGKICNPTGPSRVPRLYPVGPLISSSPLEYNDKPVQDERVDCLKWLDKQPPSSVLFVSFGSGTALPRAQVTELAAGLEASGHRFLWVLRS-PSSSFLSIEETNLSRLLPEGFENRTRDRGLVVASWAPQIPVLAHPSTGGFVSHCGWNSSLESISHGVPMICWPLFAEQRMNMFLLVNRLKVGIAAKMENDXXXXXXXXXXXXXELMEGGEAWTVRARMRELKVKAVSTLEKGGSSYKAMAAAVSEWTTNANAKPSIAMM
C0PT89______________ELAKRLSECHGLSVTFMTCQWMFSSHLIAAFSERMASASLDITFVQLPADVEIEGAELMKIETxxxxxxxxxxxxxxxxLRSLLDSGSPVSAFITDxFCSAMFDVTAKLCIPTYVFLTSPASLLSLMLSIPKLVSEIPISFKDADFPVEVPGLPPISSRDLPTPLQDRSDEAFFWFVHHFSRLREIKGVLLNTFEELETEPIKTLVEGTIFNPTDGHRIPRVYPVGPVISSSPLESRDKLLQDRRVDCLKWLDNQPPSSVLFVSFGSGGALPEAQVTELALGLEASRHRFLWVLRSTPTRVFQPSKETELSQILPEGFESRTRDRGLVVPSWAPQIPVLSHPSTGGFLCHCGWNSSLESISHGVPMITWPLFAEQRMNKFLLVNEFKVAIEAKMESDGFIRREEVERVVRELMEGEGGRRVRARVRELKEKARTALEEGGSSFTAMAAAVSEWRTNAESPTAIIAM

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
591	20	80			0.995493
592			20	80	0.995493
597	20		80		0.995493
599	80	20			0.995493
601	20			80	0.995493
603		80	20		0.995493
605		80		20	0.995493
606	80	20			0.995493
611		80	20		0.995493
700		66		33	0.997452
734		66		33	0.997452
804	33			66	0.997452
808		33		66	0.997452
817		66		33	0.997452
823	66		33		0.997452
839			66	33	0.997452
843		33	66		0.997452
861		33		66	0.997452
862	33	66			0.997452
903	25	75			0.996473
904	25	75			0.996473
907		25	75		0.996473
908	50	25		25	0.995533
910	25		75		0.996473
916		25		75	0.996473
991	75			25	0.996473
1008			33	66	0.997452
1028	66		33		0.997452
1039	50	50			1.0
1041		75		25	0.996473
1042		50	25		0.995533
1047	75	25			0.996473
1075			75	25	0.996473
1111			75	25	0.996473
1120	66	33			0.997452
1122	66		33		0.997452
1125	33	66			0.997452
1128		33		66	0.997452
1147	83		16		0.994512
1150			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain