SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7921

Length: 2302 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7921
AGTCAAAAAGAACCAGGGTCTTCGGTTTCTGCCGAATCAAGAGAAGTGAAAACAACCAACTTAAGCAATGAAGTTCAGGCAACTAACAATCCAATACAACTTTTAGAACAAGGAATGGAAAGCCAGAATGTAGACTCTCTTACTTCTTCTGAAGTTGTAGATTCTACTCAAGACATGGAATCTTGCACACATTTTGAAAATCCTGCTTCACCTGCAGGTAGAGACTCTCAGGAAGCCTCCAAAGACTCCTTCATTTCTCAAGAGAAGATAGAAATTGGTCCTAATATTAGTGAGAATGACTCTGCAGACCCAGGAAATTTAAATGTTGTTGAAGAAGATGAGCAACCCACATCAGATGAAAGTCATTCTGGAGAAGCAGACAGTCCACATTCTGCAGAGTCTAGCAAGAAACTTTCTGCAGCTGCTCCACCATTCAATCCTGGGACGACTGCAGCTCTACTCCCTGTATTTGGCACAATTGCAGTTACCCCTTTCAAAGATGGAAGAGCTTCTGATCCTGGTGGCATTTTACCTTGTCCAATAGTCATTCCTCACATGAACAATACCATGGCAGCTGTTACACCTATCCGTAAATCACCCCATCAGTCTCCTGCAACAAGGGTGCCTTATGGTCCTCGTTTGGCAGGTCACAACAGACCATCCCCTCGTGCTCCCCGCACTAAACCCCTATACCATCCCAAATGGGGAGCAAACAACTGAAGGAAACAGTCCCAATGTTCCCTGCAGATTTATGAACCCAAATGCAGCTGAATTTGTACCTGGAAAAGCTTGGCAACCATCTCAGTCTACATCTCCTCCTGTTATCTCACCCATACAAACCAACTCCATTGATGATGATACAGAAGCTCAATTTGATGGCAGCGAAAAGTCTCCAGTGTGTGATAATGTAACAACCGATATCCCAGAAGTTATTTCAAACAAGGTTGAAGTGGCTACTATTCCAGAACAAAATGGGTCTGAAGACACATTGGATGTGACAATCTTGACTGAAAAAGATGAAACGGTTCTGAAAAATAGAGAAGACGTTGAAGAAAAAGATAATTATTCACGTAAAATTGATTTAAAGCATGATGAAATCCATGAGAAACGTCTTCCAAATGTTTCTCAAGATTCAATCCAGCAAAAGACGGATGCAGATGAGGAAAAACATCATGATTCAGAAATCAAGCCTCCTGTTTCTACAGTTTTGAAGAGCGCTTCATCAAAGCTTTGGGCTGACATTGCTAGCAGTGAGAGTGAAACTGAGGTTGATGATGCTTCAGATCCTGTTAAAGGTGACAGTGCAGTAGTTGCCATTGTATACACAAGTAAAGGAAGCAACAACACAAATTCCCAGTTCAGTGGAGGTGAAACCAGCACTAAAGAAGCATCAGGAAAGAACGACTTTGGCAGTTCTCAACCGGAATGTGCTAATGGTCAAACAACAGAGCAAATAAAGCAAGCTGACAACGAGAAAGGCCCAAAAGAAGAGCCTTTGGCAGAAAATGGACAGAGTGAGTGCTCTGAAGGCAGTGACAGTGGTAGTGGAGAAGGGAGTGCAATCTATGAAAATAAGCCAAGCGATAGAGATGGGTTCACTCTTGTAACCAATAGGAGGAGAAACTATAGAAACAACCAGTTCAAGAACCCACCTAAAACTGTATACAAACAGCAACCAAATGGTTCATCTGCACCTCAGTCATCCAAAGAATATAATGGTGCAAACAGGAAAACAGAAGTCACAGCCACCCATACTTCTAATGGAGAACCTATCACAGCTTCTCCCACTCAATCTGTAGTAAGTGTTCGATGACGATAACTTGAATTTTCCAATAGAAGTTAATTACTTCTGGGAAATCCGAGTGTGATGATTGCCAACAAGCTTGTTAACAGAAAGTAAGCAGAGGGTCCGTCATCATTGATGAGTTTTCATTTATAAATGTCATGTTTAATGTCAACTAAGGCAACTGTTTGAGAATTTTCTGGAATGGGTGACAGATGGATACCTACTGATGCACTTGTTCGTGTCTTGCTATCTATTCAAGGCTTTGTATAGACTGCAAATGAAGCCTCCTAACCATGGAGTGCGGTAGAGTACTTTACTTTTATTTTTCTTATTCATTGTTCAATCTCGTATTTGAGAGATGAGGGCTGCTGGTGCTCCATCTATTACATCACTCTGAATAGAAGGAGTCTGAAGGATCCAACAACTCCAGCAACAGCAAGGTTTCACCTTCAAATGTTAAATCCCTGAGTTGAGCTTATTTGTTTATGTTTGATAGCAGTCCGTGTTATTATTGGA

Ace file of the UniGene sp_v2.0_unigene7921 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	33%
Blast2go	protein kiaa0664 homolog	-	-	9.92563e-24	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A2X335

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 152 aas, putative chimeric sequence, your sequence is shorter than subject: 240 - 1770

Fln protein: SQKEPGSSVSAESREVKTTNLSNEVQATNNPIQLLEQGMESQNVDSLTSSEVVDSTQDMESCTHFENPASPAGRDSQEASKDSFISQEKIEIGPNISENDSADPGNLNVVEEDEQPTSDESHSGEADSPHSAESSKKLSAAAPPFNPGTTAALLPVFGTIAVTPFKDGRASDPGGILPCPIVIPHMNNTMAAVTPIRKSPHQSPATRVPYGPRLAGHNRPSPRAPRTKPLYHPKWGANN*

Protein Length: 241

Fln nts: AGTCAAAAAGAACCAGGGTCTTCGGTTTCTGCCGAATCAAGAGAAGTGAAAACAACCAACTTAAGCAATGAAGTTCAGGCAACTAACAATCCAATACAACTTTTAGAACAAGGAATGGAAAGCCAGAATGTAGACTCTCTTACTTCTTCTGAAGTTGTAGATTCTACTCAAGACATGGAATCTTGCACACATTTTGAAAATCCTGCTTCACCTGCAGGTAGAGACTCTCAGGAAGCCTCCAAAGACTCCTTCATTTCTCAAGAGAAGATAGAAATTGGTCCTAATATTAGTGAGAATGACTCTGCAGACCCAGGAAATTTAAATGTTGTTGAAGAAGATGAGCAACCCACATCAGATGAAAGTCATTCTGGAGAAGCAGACAGTCCACATTCTGCAGAGTCTAGCAAGAAACTTTCTGCAGCTGCTCCACCATTCAATCCTGGGACGACTGCAGCTCTACTCCCTGTATTTGGCACAATTGCAGTTACCCCTTTCAAAGATGGAAGAGCTTCTGATCCTGGTGGCATTTTACCTTGTCCAATAGTCATTCCTCACATGAACAATACCATGGCAGCTGTTACACCTATCCGTAAATCACCCCATCAGTCTCCTGCAACAAGGGTGCCTTATGGTCCTCGTTTGGCAGGTCACAACAGACCATCCCCTCGTGCTCCCCGCACTAAACCCCTATACCATCCCAAATGGGGAGCAAACAACTGA___AGGAAACAGTCCCAATGTTCCCTGCAGATTTATGAACCCAAATGCAGCTGAATTTGTACCTGGAAAAGCTTGGCAACCATCTCAGTCTACATCTCCTCCTGTTATCTCACCCATACAAACCAACTCCATTGATGATGATACAGAAGCTCAATTTGATGGCAGCGAAAAGTCTCCAGTGTGTGATAATGTAACAACCGATATCCCAGAAGTTATTTCAAACAAGGTTGAAGTGGCTACTATTCCAGAACAAAATGGGTCTGAAGACACATTGGATGTGACAATCTTGACTGAAAAAGATGAAACGGTTCTGAAAAATAGAGAAGACGTTGAAGAAAAAGATAATTATTCACGTAAAATTGATTTAAAGCATGATGAAATCCATGAGAAACGTCTTCCAAATGTTTCTCAAGATTCAATCCAGCAAAAGACGGATGCAGATGAGGAAAAACATCATGATTCAGAAATCAAGCCTCCTGTTTCTACAGTTTTGAAGAGCGCTTCATCAAAGCTTTGGGCTGACATTGCTAGCAGTGAGAGTGAAACTGAGGTTGATGATGCTTCAGATCCTGTTAAAGGTGACAGTGCAGTAGTTGCCATTGTATACACAAGTAAAGGAAGCAACAACACAAATTCCCAGTTCAGTGGAGGTGAAACCAGCACTAAAGAAGCATCAGGAAAGAACGACTTTGGCAGTTCTCAACCGGAATGTGCTAATGGTCAAACAACAGAGCAAATAAAGCAAGCTGACAACGAGAAAGGCCCAAAAGAAGAGCCTTTGGCAGAAAATGGACAGAGTGAGTGCTCTGAAGGCAGTGACAGTGGTAGTGGAGAAGGGAGTGCAATCTATGAAAATAAGCCAAGCGATAGAGATGGGTTCACTCTTGTAACCAATAGGAGGAGAAACTATAGAAACAACCAGTTCAAGAACCCACCTAAAACTGTATACAAACAGCAACCAAATGGTTCATCTGCACCTCAGTCATCCAAAGAATATAATGGTGCAAACAGGAAAACAGAAGTCACAGCCACCCATACTTCTAATGGAGAACCTATCACAGCTTCTCCCACTCAATCTGTAGTAAGTGTTCGATGACGATAACTTGAATTTTCCAATAGAAGTTAATTACTTCTGGGAAATCCGAGTGTGATGATTGCCAACAAGCTTGTTAACAGAAAGTAAGCAGAGGGTCCGTCATCATTGATGAGTTTTCATTTATAAATGTCATGTTTAATGTCAACTAAGGCAACTGTTTGAGAATTTTCTGGAATGGGTGACAGATGGATACCTACTGATGCACTTGTTCGTGTCTTGCTATCTATTCAAGGCTTTGTATAGACTGCAAATGAAGCCTCCTAACCATGGAGTGCGGTAGAGTACTTTACTTTTATTTTTCTTATTCATTGTTCAATCTCGTATTTGAGAGATGAGGGCTGCTGGTGCTCCATCTATTACATCACTCTGAATAGAAGGAGTCTGAAGGATCCAACAACTCCAGCAACAGCAAGGTTTCACCTTCAAATGTTAAATCCCTGAGTTGAGCTTATTTGTTTATGTTTGATAGCAGTCCGTGTTATTATTGGA

Fln Alignment:

Contig7921___SQKEPGSSVSAESREVKTTNLSNE---VQATNNPIQLLEQGMESQNVDSLTSSEVVDSTQDMESCTHFENPASPAGRDSQEASKDSFISQEKIEIGPNISENDSADPGNLNVVEEDEQPTSDESHSGEADSPHXXXXXXXXXXXAPPFNPGTTAALLPVFGTIAVTPFKDGRASDPGGILPCPIVIPHMNNTMAAVTPIRKSPHQSPATRVPYGPRLA-GHNRPSPRAPRTK
A2X335______________SPKDSTSQGSKETGEGKSSNPDDEQTVVLAGSN-----QSETQPEKKRDLVASDVSSSSQSLTTATEANAPNEVASMVTEANDSSS-----------NDDERDAGEDAQEQMSSGGENEKSSPSESEKNDSPGAKETASKLSAAAAPFNPST----VPAFGSMAIPGFREH-----GGLLPSPANVPPMLSI-----PLRKHPHQSATARVPYGPRLAGGYNRSGHRGPRNK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1441		33		66	0.997452
1821			80	20	0.995493
1955	25		75		0.996473
1956		25	75		0.996473
1957	25		75		0.996473
2053	50		50		1.0
2192	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain