SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7892

Length: 1039 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb\|AAL24321.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN65106.1\| Unknown protein [Arabidopsis thaliana] gb\|AAO00774.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP42730.1\| At1g53120 [Ara	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	rna-binding s4 domain-containing protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II S4	IPR017506	-	0.0	-
Sma3	RNA-binding S4 domain	IPR002942	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS86

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 288 - 332

Fln protein: S*PWLSLTHTTSLLTGAAPKNAAAALKYDKEDHLKGLSKGSVEPLVKLVLVQAQKAATGREVFHSDFLTPPVLEDALLAIKKLSDVETLVQGGYPQAERCRLSIGHPDVLSSALDAVAALSISGNFTFDPALHGDFLGAVLATGIRREKIGDILLQGEKGAQVIVVPELVDYLVSSLTQVRNVPVSCSPIPLLALEFQPPRTKVLKSVEASLRVDAIASAGFQMSRSKLVNLISSGDVRVNWSEVTKNGTLLKAGDIISIKGKGRVQVGEIKTTRKGKFAVDLIRYI*

Protein Length: 289

Fln nts: CGTCGTGACCTTGGCTGTCACTCACACACACAACTTCACTGTTGACAGGAGCAGCTCCGAAAAATGCAGCAGCTGCTTTAAAGTATGATAAAGAAGATCATCTTAAAGGACTAAGCAAAGGCAGTGTTGAACCTCTTGTCAAATTGGTTCTTGTACAGGCACAAAAAGCAGCCACTGGACGGGAAGTCTTCCATTCAGATTTTTTAACGCCTCCTGTTCTAGAGGATGCGCTATTGGCAATAAAGAAGCTATCAGATGTGGAGACCTTGGTGCAAGGTGGCTATCCACAGGCTGAACGCTGTCGCCTATCAATTGGACATCCTGATGTTCTCTCTTCTGCTTTAGATGCAGTTGCTGCATTAAGCATCTCAGGAAACTTTACTTTTGATCCTGCATTACATGGTGATTTTCTTGGAGCTGTTCTGGCTACAGGCATTAGAAGGGAAAAAATTGGTGATATTCTCTTGCAGGGTGAGAAAGGGGCTCAAGTCATAGTTGTTCCAGAGCTTGTCGATTACCTAGTGTCGTCACTCACACAGGTTCGCAATGTTCCCGTATCTTGTTCACCTATACCATTACTTGCCTTGGAATTTCAACCACCAAGGACAAAGGTACTTAAGTCCGTTGAAGCATCCTTAAGAGTTGATGCCATAGCTAGTGCAGGTTTTCAAATGTCTCGTTCCAAGCTTGTTAACTTGATCAGTAGTGGGGATGTTCGAGTCAACTGGAGTGAAGTAACAAAGAATGGAACTTTGCTGAAGGCTGGAGACATAATCTCTATCAAAGGAAAAGGAAGGGTACAGGTGGGAGAAATAAAAACCACAAGGAAAGGCAAGTTTGCAGTGGATCTTATTCGATATATATGA___AGTTTTTGAATTAAATAATAGAATAAAATATCTGATAATAACTTTGGCATTAGAAGTTAATGCATACGATATTTTCACTTGGAGCAATTGAAGCTCAAAAAGAATATTGCAAAACAAACAATCTGAAAATCTTACAAATGTTTCATGCTTATGTTAACAAAAGTTGAGTAAGT

Fln Alignment:

Contig7892___LKYDKEDHLKGLSKGSVEPLVKLVLVQAQKAATGREVFHSDFLTPPVLEDALLAIKKLSDVETLVQGGYPQAERCRLSIGHPXXXXXXXXXXXXXXISGNFTFDPALHGDFLGAVLATGIRREKIGDILLQGEKGAQVIVVPELVDYLVSSLTQVRNVPVSCSPIPLLALEFQPPRTKVLKSVEASLRVDAIASAGFQMSRSKLVNLISSGDVRVNWSEVTKNGTLLKAGDIISIKGKGRVQVGEIKTTRKGKFAVDLIRYI
A9NS86______________LKYEKEDHLKGLSKGSAESPVKLILVQAQKAASGREIFHSDFLMPPVVEDALSAIKKLSDVEALVQGGYPQAERCRLSIGHTDVISSAPDAVSALSISGNFTFDPASHGDFLGAVLATGIRREKVGDILLQGEKGAQIIVVPELVDYIVSSLTQVHNVPVSCSPIPLLALEFQPPRTKVLKSVEASLRVDAIASAGFQMSRSKLVNLISGGDVRVNWSEVTKNGTLLKTGDIISIKGKGRVQLGEIKTTRKGKFAVDLIRYL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
187	20		80		0.995493
273			80	20	0.995493
335	16	83			0.994512
336	16			83	0.994512
338		83	16		0.994512
491	25			75	0.996473
496	50			50	1.0
511		50		50	1.0
518		16	50	33	1.0
523	50			50	1.0
527		50		50	1.0
528		50		50	1.0
727		58		41	1.0
859	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain