SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7839

Length: 1700 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7839 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plant intracellular ras group-related LRR 4 [Arabidopsis thaliana] emb\|CAB54875.1\| putative protein [Arabidopsis thaliana] emb\|CAB80263.1\| putative protein [Arabidopsis thaliana] gb\|AAL61931.1\| putative protein [Arabidopsis thaliana] gb\|AAM91130.1\| putati	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 389 - 524

Fln protein: RRQKSIGEFKIAYFRRELFFQKSFCNCFQHRYRC*RGQKLSLIKLASLIEITAKGGAEKLDLQGKLMDQVEWLPDSIGKLRDLAAIILSENRIVTLPRSIEGLSKLKKLDIHANQLTNLPDSIGELANLTDLDLHGNRLQTLPDSVGMLSRLVSLDLSSNKLLSLPESVGQLSNLKRLNIETNDIEELPYTIGQCVALTELRADYNKLKALPEAVGKLESLQVLTLHYNKIKSLPSTMGSLTNLKELDVSFNELESIPESLCLATSLVKLNVASNFADLRKLPRSIGNLGMLEELDISNDQINILPDSFQMLTNLQILKAEETPLEMPPRPIVESGAKAVVQFMIDYVAKRDAAVKETKPKGRWSMFCSCLRKRKRAESNAQYVRAGS*

Protein Length: 390

Fln nts: ACCGCCGCCAGAAATCGATTGGTGAATTCAAGATTGCCTACTTTAGAAGAGAACTTTTCTTTCAAAAAAGCTTCTGCAATTGCTTTCAGCACAGATACAGATGCTGAAGGGGACAGAAGCTCAGTTTAATAAAGCTTGCCAGCCTTATTGAGATAACTGCCAAGGGAGGTGCTGAGAAGTTGGATCTTCAAGGAAAATTGATGGACCAAGTTGAGTGGCTGCCCGACTCAATTGGAAAGCTTCGTGATCTTGCTGCAATTATTTTGTCTGAAAACAGAATAGTGACTCTTCCCAGGTCAATTGAAGGGCTTTCCAAGTTAAAGAAACTGGATATTCATGCAAATCAGCTGACGAATCTTCCAGATTCCATTGGTGAGTTGGCCAATCTAACTGATCTAGACTTGCATGGCAATCGCTTACAAACTTTGCCTGATTCAGTTGGAATGCTTTCTCGGCTTGTATCCTTGGACTTGAGTTCAAATAAGCTTTTGTCACTGCCTGAGTCTGTTGGGCAGCTTAGCAATTTGAAAAGACTGAATATTGAGACCAATGACATTGAAGAGTTACCATATACAATTGGTCAGTGTGTTGCTCTTACTGAGCTTCGAGCAGATTACAATAAACTCAAAGCTCTGCCTGAAGCTGTTGGCAAGCTTGAGTCATTACAAGTCCTAACATTGCATTATAACAAAATAAAGAGCCTTCCGTCAACCATGGGTTCTTTAACCAATTTGAAAGAACTTGATGTAAGCTTCAATGAACTGGAATCTATACCTGAGAGTTTGTGCCTTGCCACAAGTCTTGTTAAGCTGAATGTTGCCAGCAATTTTGCTGACTTACGGAAGCTTCCACGATCTATTGGAAATCTCGGGATGCTTGAGGAGTTAGACATTAGTAATGATCAAATAAACATCCTTCCTGACTCCTTTCAGATGCTTACGAATCTTCAAATTCTTAAAGCTGAAGAGACACCACTGGAGATGCCACCAAGACCTATTGTTGAAAGTGGAGCTAAGGCTGTTGTGCAGTTTATGATTGATTATGTTGCAAAAAGGGATGCAGCAGTAAAAGAGACTAAGCCAAAGGGGAGGTGGTCAATGTTCTGCTCATGTTTGAGGAAACGCAAGCGGGCTGAAAGCAATGCACAATATGTTAGAGCTGGATCATAA___GCGCTATGCCTTGAACATCAGGTCAGAGCATATTTTTATGAAAGTTTGTGGAGCACTTTCACATCAGGAATTTTGACATTATAATAGAATTTCACTTCATCTCCATGCTTTATGGGCTTGATACGAAACTATAAAAGTCATTGCAACTTCTTTTTTGACATCAAATGCTGTTCCACTGAGAACCATGAAGGAACCTGGCATTCAAGTATTTTTTTTCCCTAAATAAACCAAACAAGCATGAAAGAATTGGTAACATTGAAGCAAAGTTGTTTTTGATACAAGAGCTTTTACAGCCCCTCTGCATTACATCTCAACATTTATCTCAAGCTCAACTATGAGCAAAAGAGGACATAAATAAATGTAACGTAAGTGTATCTTCTTCCATTAGTAAACAACATGGTTATTTTTGGTCTTTCATGCATTCTATATTTGAAACATGGTTATTGATATGTCCTTTGTAATAATGATATCATGCATTGTATATTTGAAACACGGCTATTGATATGCCCTCTGTAATAACGATACCAGTCA

Fln Alignment:

Contig7839___DQVEWLPDSIGKLRDLAAIILSEN--RIVTLPRSIEGLSKLKKLDIHANQLTNLPDSIGELANLTDLDLHGNRLQTLPDSV
B8LQU6______________NELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1048	25	75			0.996473
1050		75	25		0.996473
1051	75			25	0.996473
1154			50	50	1.0
1208	50		50		1.0
1277	50			50	1.0
1283	83		16		0.994512
1316	83		16		0.994512
1327	40	60			1.0
1343	80		20		0.995493
1356	40		60		1.0
1403		33		66	0.997452
1447	33			66	0.997452
1448	33	33		33	0.997753
1451			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain