SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7827

Length: 1209 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7827 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative Not1 N-terminal protein [Oryza sativa Japonica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	84%
Blast2go	ccr4-not transcription complex subunit 3	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	89%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Not CCR4-Not complex component, N-terminal	IPR007207	-	-
Sma3	NOT2/NOT3/NOT5	IPR007282	-	-
Sma3	CCR4-NOT complex, subunit 3/ 5	IPR012270	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5BTD7

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 275 - 652

Fln protein: MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKAEMRDWLNFMVSELESQIDCFEADIEGLSVKKGKSKPPRLTHLEESITRHKAHIVKLELILRLLDNDELSPEQVNDVKDFVEDYVERNQTDFEEFEDVDDLYNTMPLDKVEGLEDLVTIVPPAVVVKEKLSIFCPGSCRCSNCEWHFFESFHCI

Protein Length: 276

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTATGAAAATGGCAATCGATCATAAACCCCAAACATCTTTTCACAAGAAACCATTGATGGCCATAAATGACTAAAATGCGGGGAATCCATGTCCAAGCAACGCAAACTGTATGGGAGCTGAATACAAATGTCTAGTGATCAGAGGCTTTGATACTAGGATTGCGAACAAACTACAGATTTCTGGTTCTTGGACTGGGAGAATAAGTTGAGAGGGTCTTGAAACCCTAGGTAACTGCAGCAAACCCTAGCGGGGAAGTGGAGATTCTGTCATTCTCAGCAGATTTGAGGAGGATATTTGTAAACGGGATTGGATGTTTGATACCCTCAGGGATTACGCGGGGGCTGATAAGAAGTCAAA_-_ATGGGCGCCAGTCGCAAACTCCAGGGCGAGATCGATAGGGTTTTGAAAAAGGTTCAGGAGGGCGTTGACGTCTTTGACAGTATTTGGAATAAGGTGTATGATACTGAGAATGCAAATCAGAAAGAGAAATTCGAAGCAGATCTGAAAAAGGAGATCAAGAAGTTGCAGAGATATAGAGATCAAATAAAGACATGGATTCAGTCAAGTGAAATCAAGGACAAAAAGGCTCTGCTAGACGCACGCAAACTCATTGAGCGTGAAATGGAGCGGTTCAAAATTTGTGAAAAGGAAACTAAAACGAAGGCATTTTCAAAGGAAGGCCTGGGCCAACAGCCAAAGACTGATCCAAGAGAAAAGGCCAAGGCGGAGATGAGAGATTGGTTGAACTTCATGGTTAGCGAGTTGGAGTCACAAATTGATTGCTTTGAGGCTGATATTGAGGGCCTCTCAGTGAAAAAGGGCAAGTCTAAACCTCCACGACTGACCCATTTAGAGGAATCTATTACACGCCATAAGGCTCATATTGTGAAGCTAGAGCTTATTTTGAGACTTCTGGATAATGATGAATTAAGTCCTGAACAAGTAAATGATGTGAAAGATTTTGTGGAAGACTATGTGGAGCGTAATCAGACTGATTTTGAAGAATTTGAGGACGTAGATGATCTATACAACACAATGCCCTTAGATAAGGTGGAGGGATTAGAAGATTTGGTTACAATAGTTCCCCCTGCAGTTGTTGTCAAGGAGAAGCTGAGTATCTTTTGCCCAGGCAGCTGCAGGTGCTCCAACTGTGAATGGCACTTCTTTGAAAGTTTCCATTGCATCC

Fln Alignment:

Contig7827___MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIXXXXXXXXXXXL-------IEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKAEMRDWLNFMVSELESQIDCFEADIEGLSVKKGKSKPPRLTHLEESITRHKAHIVKLELILRLLDNDELSPEQVNDVKDFVEDYVERNQTDFEEFEDVDDLYNTMPLDKVEGLEDLVTIVPPAVV
A5BTD7______________MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNTVVGELESQIDXFEAEIEGLSVKKGKTRPPRLTHLETSIARHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESLEDLVTIGAPGLV

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
1002		91		8	0.999807
1031	78	8		13	1.0
1032		8	86		0.999539
1033		9		77	1.0
1036	4	76	19		1.0
1038	80	20			1.0
1043	20			80	1.0
1044	20	80			1.0
1045			20	80	1.0
1052			20	80	1.0
1101	50		50		1.0
1129	87	12			0.992554
1135		14	71	14	0.984337
1136		14	85		0.993533
1137	14	14		71	0.984337
1138		16	16	66	0.988813
1139	16			66	0.988813
1140		66		33	1.0
1141			20	80	0.995493
1142	20			80	0.995493
1143		20	80		0.995493
1144	20			80	0.995493
1146	80	20			0.995493
1147	80	20			0.995493
1151	80		20		0.995493
1153		20	80		0.995493
1154	20			80	0.995493
1155		20		80	0.995493
1156			20	80	0.995493
1157	20		80		0.995493
1158		20	80		0.995493
1188		25	25	50	0.995533
1189		25	50	25	0.995533
1190	50	25		25	0.995533
1191		25	75		0.996473
1195	66		33		0.997452
1196		66		33	0.997452
1197	66	33			0.997452
1198		33	66		0.997452
1202	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain