SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7757

Length: 522 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene7757
CACAATTTCGATTTTTGGAGCGCTTGCTCGTGGTTCATGGACATTGGTGCTATAAGAGGATTGCACAGATGATCTGCTATTTCTTTTACAAAAATATATCTTTTGGGCTTACACTCTTCTACTTTGAAGCATATACAAGTTTCTCTGGACAGCCCATATATGATGATTGGTATATGTTGCTTTTCAATGTTATTTTGACATCACTGCCAGTCATATCTTTGGGGGTTTTTGAGCAGGATGTTTCATCTGAAGTATGTTTGCAGTTCCCTGCTCTCTATCAGCAGGGCCCAAGGAATATATTTTTTAACTGGTACCGTGTACTTGGATGGTTGGCAAATGGAGTTTATGTGTCTCTTATTACATTCTTTTTTAATATCGGTATCTTCCGAGATCAAGCATTTCGTGTTGGAGGGCAGACACCTGATATGGCAATTGTAGGAACAACCATGTTCACGTGTATCATCTGGACTGTCAATTGCCAGATTGCACTAGATATCAGCCATTTTACATGGATACAACACC

Ace file of the UniGene sp_v2.0_unigene7757

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Oryza sativa Japonica Group] dbj\|BAD54535.1\| putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Oryza sativa Japonica Group] gb\|EEC80823.1\|	-	-	83%
FL-Next	sp=Putative phospholipid-transporting ATPase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	aminophospholipid atpase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	89%
Blast2go	phospholipid transport	GO:0015914	Biological Process	89%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	89%
Blast2go	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LNQ4

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 173 - 1216

Fln protein: QFRFLERLLVVHGHWCYKRIAQMICYFFYKNISFGLTLFYFEAYTSFSGQPIYDDWYMLLFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNIFFNWYRVLGWLANGVYVSLITFFFNIGIFRDQAFRVGGQTPDMAIVGTTMFTCIIWTVNCQIALDISHFTWIQH

Protein Length: 174

Fln nts: CACAATTTCGATTTTTGGAGCGCTTGCTCGTGGTTCATGGACATTGGTGCTATAAGAGGATTGCACAGATGATCTGCTATTTCTTTTACAAAAATATATCTTTTGGGCTTACACTCTTCTACTTTGAAGCATATACAAGTTTCTCTGGACAGCCCATATATGATGATTGGTATATGTTGCTTTTCAATGTTATTTTGACATCACTGCCAGTCATATCTTTGGGGGTTTTTGAGCAGGATGTTTCATCTGAAGTATGTTTGCAGTTCCCTGCTCTCTATCAGCAGGGCCCAAGGAATATATTTTTTAACTGGTACCGTGTACTTGGATGGTTGGCAAATGGAGTTTATGTGTCTCTTATTACATTCTTTTTTAATATCGGTATCTTCCGAGATCAAGCATTTCGTGTTGGAGGGCAGACACCTGATATGGCAATTGTAGGAACAACCATGTTCACGTGTATCATCTGGACTGTCAATTGCCAGATTGCACTAGATATCAGCCATTTTACATGGATACAACACC

Fln Alignment:

Contig7757___QFRFLERLLVVHGHWCYKRIAQMICYFFYKNISFGLTLFYFEAYTSFSGQPIYDDWYMLLFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNIFFNWYRVLGWLANGVYVSLITFFFNIGIFRDQAFRVGGQTPDMAIVGTTMFTCIIWTVNCQIALDISHFTWIQH
Q9LNQ4______________QFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYNDYYLLLFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGKKNLFFDWYRILGWMGNGVYSSLVIFFLNIGIIYEQAFRVSGQTADMDAVGTTMFTCIIWAVNVQIALTVSHFTWIQH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
284	12		87		0.992554
285			87	12	0.992554
288		87		12	0.992554
365		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain