SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7591

Length: 899 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7591

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	17.7 kDa heat shock protein n=1 Tax=Helianthus annuus RepID=Q39930_HELAN	-	-	8.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
833		31	68		1.0
838	31		68		1.0
847		31		68	1.0
849	68			31	1.0
873		66		33	1.0
884		60		40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
95	107	TC TC TC TC TC TC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
833		31	68		1.0
838	31		68		1.0
847		31		68	1.0
849	68			31	1.0
873		66		33	1.0
884		60		40	1.0

Position	A %	C %	G %	T %	Probability
833		31	68		1.0
838	31		68		1.0
847		31		68	1.0
849	68			31	1.0
873		66		33	1.0
884		60		40	1.0

Position	A %	C %	G %	T %	Probability
833		31	68		1.0
838	31		68		1.0
847		31		68	1.0
849	68			31	1.0
873		66		33	1.0
884		60		40	1.0