SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7465

Length: 1173 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7465 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglycosylase n=2 Tax=Asteroideae RepID=D9I0J0_DAHPI	-	-	61%
FL-Next	sp=Probable xyloglucan endotransglucosylase/hydrolase protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	xyloglucan endotransglucosylase hydrolase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		77%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		77%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		77%
Blast2go	Glycosaminoglycan degradation	00531		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	77%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	77%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	77%
Blast2go	apoplast	GO:0048046	Cellular Component	77%
Blast2go	cell wall	GO:0005618	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LER3

Fln msg:

Fln protein: MVFLVIIFGICLTSVSARPVSFSGGFKVTWGDDHVRTRQDNSIELMLDRNSGAGFASKHEYMFGVVSMKIKLVPGDSAGTVTAFYMSSDRNDVRDEVDFEFLGNISGQPYTVQTNLFTRGNGGREQRVDLWFDPSSDFHKYSIFWNHYQIIFSVDDIPIRVYKNNEAKGVQYPSNQRMAIFSTLWDGDSWATRGGLDKIDWSKAPFVTSYTDFDIDACELPANPSCASNPNNWWEGPSYRNLSPHQARQYKWVRKNYMIYDYCTDRSRYPVPPTECTVGI*

Protein Length: 282

Fln nts: GTTCTGGAGTTGAAGAGACTTCTGGTGTAGAATTGTTGCAGAAAGA_-_ATGGTTTTCCTTGTTATTATATTTGGTATTTGCTTAACATCAGTCTCAGCACGCCCGGTATCGTTTTCAGGCGGTTTTAAAGTCACTTGGGGAGATGACCATGTGAGGACTAGGCAGGATAATTCAATTGAGTTAATGTTGGATCGTAATTCAGGCGCAGGATTTGCATCAAAGCATGAGTACATGTTCGGGGTTGTGAGCATGAAAATCAAACTCGTCCCAGGTGATTCTGCAGGCACAGTCACTGCTTTTTATATGAGCTCTGACAGGAATGATGTGCGAGATGAAGTGGACTTCGAGTTTTTGGGGAACATATCAGGCCAGCCTTATACAGTACAGACAAATCTCTTCACTCGAGGGAATGGTGGCCGAGAGCAGAGAGTGGATCTCTGGTTCGACCCTTCATCAGACTTTCACAAATATTCTATTTTCTGGAACCATTACCAGATTATATTTTCTGTGGATGACATCCCCATTAGGGTTTACAAGAACAATGAAGCCAAAGGCGTACAATACCCTAGTAATCAGAGGATGGCGATCTTCTCTACCCTCTGGGATGGCGATAGTTGGGCAACGAGAGGAGGACTGGACAAAATCGACTGGAGCAAGGCACCATTCGTGACTTCCTACACGGATTTTGACATCGATGCTTGCGAGTTACCAGCCAACCCGAGCTGCGCGTCCAATCCCAACAATTGGTGGGAAGGTCCGAGTTACAGGAATCTAAGCCCACATCAAGCAAGACAGTACAAATGGGTGAGGAAGAATTACATGATTTACGATTACTGTACAGACAGGTCCAGATATCCGGTGCCACCCACAGAGTGCACTGTTGGCATCTGA___TCATTCCCTTATTAACGTCAATAAACAGAAGCAAAACAAAACTTATGCAAGGTCATAATGGATTATCCTCACTCTAAGATGTTTTCAGCCCATGAGTGAGAAACCAGAGGTCCCGAACATATGCGGTCAACTCTAACAACAACGTAGTAAGTGATTACTATTCTTATATATATCAGTGTTAACATGGATGTATCAAGTATTCATAGATATAGAAGGTAAAAGATAAGTTTGAAATTGTCATTTTAGCTAAGAGATTATTAGAAGGTTGGGTTAGTTTATTATCG

Fln Alignment:

Contig7465___IVAERMVFLVI---IFGICLTSVSARPVSFSGGFKVTWGDDHVRTRQDN--SIELMLDRNSGAGFASKHEYMFGVVSMKIKLVPGDSAGTVTAFYMSSDRNDVRDEVDFEFLGNISGQPYTVQTNLFTRGNGGREQRVDLWFDPSSDFHKYSIFWNHYQIIFSVDDIPIRVYKNNEAKGVQYPSNQRMAIFSTLWDGDSWATRGGLDKIDWSKAPFVTSYTDFDIDACELXXXXXXXXXXXNWWEGPSYRNLSPHQARQYKWVRKNYMIYDYCTDRSRYPVPPTECTVGI
Q8LER3______________LFSSRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHI-TQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
122			80	20	0.995493
187		80		20	0.995493
255		16		83	0.994512
1056		20	80		1.0
1081	20		80		1.0
1129	23	76			1.0
1148	81			18	0.999994
1155		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain