SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7288

Length: 857 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7288

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T31J12.4 n=1 Tax=Arabidopsis thaliana RepID=Q9ZPZ3_ARATH	-	-	4.0e-11	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	agenet domain-containing protein	-	-	1.42643e-32	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Agenet	IPR008395	-	0.0	-
Sma3	Tudor-like, plant	IPR014002	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
114		87		12	0.992554
146	80			20	0.999996
216		30	69		1.0
234		82		17	1.0
236	11		88		0.999952
238		11	88		0.999952
239	88			11	0.999952
241		82	11		0.999919
245	11		88		0.999952
248	11		88		0.999952
437		16	83		0.994512
491			95	4	0.996599
492		95		4	0.996599
493	4	95			0.996599
497		96	3		0.989722
498	96			3	0.989722
504	96		3		0.989722
505		96	3		0.989722
506		3	96		0.989722
508		96	3		0.989722
509			96	3	0.989722
511	3		96		0.989722
519		80	19		1.0
554		85		14	1.0
567		15		82	1.0
596			5	94	0.999997
613		93		6	0.999998
628	73		26		1.0
640			90	9	1.0
663	42			57	1.0
670			87	12	1.0
706		8	91		1.0
728	89			10	1.0
752		86	2	11	1.0
754		87		12	1.0
778	6	93			0.99903
785		12		87	1.0
837	16			83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain