SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7228

Length: 1647 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7228

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO	-	-	3.0e-32	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	ring-h2 finger protein atl3c	-	-	0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ51

Fln msg:

Fln protein: MSSSHPAMDSYDNFKRHDNYYGDNLGDNAANYSTAMAIGSKIMIVAILLLFAVVFFAFGFLIYARYFLWRRGSSRRRRLEFVEQQDPPRLQRVGLSKSAIEAIPVFVYQSESHKEGLECAVCLCEFEENEKARQLPKCHHSFHIDCIDMWLQSHSTCPLCRSSALTDTAADSVVVLVSNEEAASGGASETNHQVSLPTVSEGNASVSMEPDLCPSCRHEEVLQSPNYPTHMLFWATQNRVSSLSNSVVFDQGAASTSRKTLDKIIIDIPRRMDSFSSPRLLCCDDRQMFSPNGQSLKSPSIRLRSFKRLLSKGKVVIPPSPDDGRNIHIEQTDSSESQG*

Protein Length: 341

Fln nts: GCATCACCGAGAACGCTTGTA_-_ATGTCCAGTTCGCATCCGGCCATGGATTCTTACGATAACTTCAAaCGGCACGATAACTATTACGGGGATAATcTAGGGGATAATGCAGCTAATTACTCGACGGCGATGGCCATTGGCAGCAAAATCATGATTGTCGCCATTCTACTTCTGTTCGCGGTCGtTTTCTTCGCTTTCGGTTTCTTGATCTACGCgCGCTACTTCTTGTGGCGCAGGGGTTCTTCCCGACGCCGCCGTCTTGAATTTGTTGAACAGCAGGATCCCCCGAGGCTCCAAAGAGTCGGCCTCAGCAAGTCGGCTATAGAAGCGATTCCCGTGTTCGTCTATCAGTCGGAGAGTCACAAAGAGGGGCTTGAATGCGCCGTCTGTTTGTGCGAATTTGAGGAGAACGAGAAGGCGAGACAGCTCCCCAAATGCCACCACAGTTTCCACATCGATTGCATAGACATGTGGCTGCAATCGCACTCGACTTGTCCGCTGTGTCGATCCAGTGCCCTGACCGACACGGCCGCCGATTCTGTCGTGGTTCTAGTAAGCAACGAGGAGGCAGCGTCAGGGGGCGCCTCTGAAACAAATCATCAGGTGTCTCTGCCCACCGTTTCAGAGGGCAACGCATCGGTTTCCATGGAACCCGACCTCTGCCCTTCGTGCAGACATGAAGAGGTTTTGCAGTCTCCAAATTATCCCACCCACATGCTTTTCTGGGCAACCCAAAACAGGGTTTCTTCCCTGTCTAACTCCGTGGTCTTCGACCAAGGGGCGGCATCGACTTCTCGTAAAACCCTCGACAAAATCATCATTGATATACCCCGAAGAATGGACAGTTTTTCTTCTCCCAGGCTACTCTGCTGCGATGACCGACAGATGTTTTCACCAAATGGGCAATCGCTTAAATCCCCCAGCATTCGGCTCCGTTCATTCAAAAGGCTCTTAAGCAAAGGCAAGGTGGTCATTCCACCGAGTCCAGATGATGGTAGAAATATTCATATTGAGCAAACGGATTCATCCGAGAGCCAAGGATAG___TTGAAAGCTAGGGTTTATTGGTTTCTCCTTCAATGAGCATTAGCATTGGAAGAACTGTATAAACATATTAGTGAGAGAGTTGATGCAAAACTTTGCCCTGCCAAGGATTGATTTTACAGCTGATATGGATGGTGAAGTACAGTGGCTGTATTCTCCATGAAACGAGGGATATGGCTTATCTCTGTGTCTAGTTGCGTCACAAGGTGATTCTGTGAAAGCCAAATATGTTTTATCCAAACTTGGGTTGCCTGTTGTTTCCGAGGAATCACTGGGAATGAGAACCCAACAACAATCAGGGCCGTGGAAGAGTCTCGAGGCTTTCAAAGTACCTGTCATTTCCGAAGAATGTGAGAACCCAACAACACCATGGCCGTGGAAAGAGTCTTGAGACTTTCCACTTTGATGGCCAAATACCTTGTAGATACAGTGTACTTCACTTAGTTTCTCTTCATTCTTTTCGTTATTGAAATTAATAATCAGCACTGCTACCTGGCGTGTTTGGTATGTATTATTTTGGAAGGAAGCATCACATAGCATTGAACAAAGATCTCAAACATACTCACGATATGAAGAGTCTTAGTCCGGAAAACATAATATATGTCAGGT

Fln Alignment:

Contig7228___MDSYDNFKRHDNYYGDNLGDNAANYSTAMAIGSKIMXXXXXXXXXXXXXXXXXXXYARYFLWXXXXXXXXXLEFVEQQDPPRLQRVGLSKSAIEAIPVFVYQSESHKEGLECAVCLCEFEENEKARQLPKCHHSFHIDCIDMWLQSHSTCPLCRSSALTDTAADSVVVLVSNEEAASGGASETNHQVSLPTVSEGNASVSMEPDL--CPSCRHEEVLQSPNYPTHMLFWATQNRVSSLSNSVVFDQGAASTSRKTLDKIIIDIPRRMDSFSSPRLLCCDDRQMFSPNGQSLKSPSIRLRSFKRLLSKGKVVIPPSPDDGRNIHIEQTDSSESQG
C0PQ51______________MDSYGNFNG-DNFNGNNTG----NDSTAMAIGSKIMIVAILVLFAVVIFVFGLQIYERCLWGRRASFRRRSLHFVDEQDPLRLQRVGLGKSAIEAIPVFVYQSENHKEGLECAVCLCEFEENEKARLLPKCHHSFH-----------STCPLCRTSAQPDKPADSVVVRVGDEEAASEGASETNQRVLLPSVAEGNASTSMESDLDLCSSCRHDEVLPSPTYPTNMLFWATPKRVSSMSNSVFFEKGATSTSRKTLDKIIIDIPQRANSFSSPRLFCSDDQQVFSPSGQSLKSPSMRLRSLKRLLSKDKKVVPPSPDDRRNLHIEQGDSSQSRG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
632			75	25	1.0
633		75		25	1.0
648		85		14	0.993533
675		83		16	0.994512
677		50	50		1.0
691		50		50	1.0
704	75	25			0.996473
1000	33		66		0.997452
1077	20	80			0.995493
1385	87		12		0.992554
1431	87			12	0.992554
1432		12	87		0.992554
1471	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain