SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7071

Length: 1740 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7071 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein with multiple splicing, putative n=1 Tax=Ricinus communis RepID=B9SG87_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	cell wall integrity protein scw1	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB8

Fln msg: your sequence is longer than subject: 323 - 245

Fln protein: MAGTGLHHQYHQPWASIASAASMQADSPYPSHNLMEEVRTIFVLGFPKDVKERELQNLLRWWPGYEASQLNFKGDQAMGFALFTTSQMAMQARDALQNLVFDAETNSILRAEMAKKNLYVKRVSDTNNFDPSKRMRTGGDYTPAAYHPPGTFVSPSATVWGPQSYLASSTASYDPYGGYPVPQVPPVPIPVAPAGYAPVQNMKDNPPCNTLFIGNLGESTSETELRGLFSGQPGFRQMKVLRQGRSTVCFIEFEDLHSAVAVHNNLQGAVLTSSDRGGMRIQYSKNPFGRKKDSSGPMGHAVDGAPGVPLADINGVSSSASQ*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTACTAGGGTACTCTAGACATTGTAAAGAGACTTTCCATTTTGATATTCATCTCTTCGTCCGCTCGTGTGTGGAGAAGACGACGGTTTTGTTCTCTGCAAATCCATCGCGCC_-_ATGGCAGGAACAGGGCTTCATCATCAGTACCATCAGCCGTGGGCATCTATCGCTTCAGCGGCTTCTATGCAAGCGGACTCACCTTACCCATCACACAACCTCATGGAAGAGGTCAGGACAATATTTGTGCTAGGATTTCCAAAAGATGTGAAGGAACGAGAACTCCAAAATCTGTTAAGATGGTGGCCAGGTTATGAAGCATCACAATTAAATTTCAAAGGTGACCAGGCGATGGGTTTTGCGCTTTTCACCACATCACAAATGGCAATGCAAGCTAGAGATGCTCTTCAGAATTTGGTATTTGATGCTGAAACAAATTCTATTTTGCGTGCGGAAATGGCTAAGAAAAATTTGTATGTGAAAAGAGTGTCAGACACAAACAATTTTGACCCAAGTAAACGAATGAGAACTGGTGGAGACTACACTCCTGCCGCTTACCATCCCCCTGGCACGTTTGTCAGTCCCTCTGCCACTGTCTGGGGTCCTCAGAGCTATTTGGCATCTTCGACTGCATCTTATGATCCATATGGAGGATATCCAGTTCCCCAAGTCCCACCAGTCCCAATTCCTGTTGCTCCTGCAGGCTATGCACCTGTTCAGAATATGAAGGACAATCCCCCCTGTAATACTTTATTCATTGGCAATCTTGGTGAGAGTACAAGTGAGACTGAGCTGCGAGGGCTTTTTAGTGGACAACCTGGTTTCCGACAGATGAAAGTCTTGCGGCAGGGAAGGAGCACAGTTTGCTTTATAGAATTCGAGGATCTACATAGTGCTGTGGCTGTCCACAACAACTTGCAAGGTGCAGTTCTCACCAGCTCAGATCGAGGTGGCATGAGAATACAGTATTCAAAGAATCCCTTTGGAAGAAAGAAAGATTCATCTGGACCTATGGGACATGCAGTTGATGGAGCTCCTGGTGTTCCTTTAGCAGATATCAATGGTGTATCCTCATCAGCATCACAGTGA___CACCAGATTAGGTTGACAGCAACAACATTATGAGGGACGTATTCTACTCTTTAATGCTCCTTTTGAAGCATGAAATTAGAAATCAATGCCATCATCAGCATCATGTTGGTGCATCAGGTTGCATCATTGTTAGCTGTTATCATTGATGTTGTTGTTGTCAGCATATCCTCCATTTTTTTTTGTTGCATGTGGTCGTTATTGCTATCATTTGTGCCATTATCATCCATAATATAATAGGTAGGATGGTGTATGCTGCATCTGTTAGGGGTATTATGGAGATATGCATCGGTCAAGCATGGAGAAAGGCTGAAGAATAATATTTTCTATTCGTGGGAGGGGAGGTGCATCAGAATCATATTGGAGACATTTTGTGCCATCATCATCCATGCAGGAACAATAGTTCTTCATATTGGCATACTGGCATTGGCATTAGGACTAAATATTTTTGTAGGAACATCTGCATGCACCATGCAAGATGATCAATCCATACTCATGTTGTGCTTGATTATGCAACTTGTTAGCACCTTGATCATCTACATTGTAGGGTTCAGGATTTTGTTTTATTTGGCTGCTTGCCCAAAAGATCTTTCGTATATATGCATCTTTTCATACATAGCATTGTTTCATATTTG

Fln Alignment:

Contig7071___MGFALFTTSQMAMQARDALQNLVFDAETNSILRAEMAKKNLYVKRVSDTNNFDPSKRMRTGGDYTPAAYHPPGTFVSPSATVWGPQSYLASSTASYDXXXXXXXXXXXXXXXXXXXXXXXXVQNMKDNPPCNTLFIGNLGESTSETELRGLFSGQPGFRQMKVLRQGRSTVCFIEFEDLHSAVAVHNNLQGAVLTSSDRGGMRIQYSKNPFGRKKDSSGPMGHAVDGAPGVPLADINGVSSSASQ
D5ACB8______________MGFALFSTAHMAIQARDALQNLVFDADTNSVLRAEMAKKNLYVKRVSDTNNFDQSKRMRTGGDYTPAAYHAPGTFVSPPASVWGPQTYMASSTASYDPYGGYPVAQVPPVPIPVAPAGYAPVQNMKDNPPCNTLFIGNLGENTNETELRGLFSGQPGFRQMKVLRQERSTVCFIEYEDLHSAAAVHNNLQGAVLSSSERGGMRIQYSKNPFGRKKDLSGPMPHAVDGTPGATLSDLNGVSSSASQ

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
81	33			66	0.997452
129		20		80	0.995493
186	14	85			0.993533
187	57	14			1.0
362	95		5		0.997749
454	66	16	16		0.988813
457	80		20		0.995493
458	80		20		0.995493
459	80			20	0.995493
460	75	25			0.996473
464		20	80		0.995493
467		20	80		0.995493
484		85		14	0.993533
485	85		14		0.993533
488	85		14		0.993533
490		85	14		0.993533
492	85	14			0.993533
493	14			85	0.993533
495	85	14			0.993533
496		14		85	0.993533
502		83	16		0.994512
504	83	16			0.994512
507	83		16		0.994512
509		16		83	0.994512
888			16	83	0.994512
889	16			83	0.994512
890		83	16		0.994512
1385			10	90	0.90298
1386	10			90	0.90298
1387		10		90	0.90298
1394			11	88	0.923564
1396	88		11		0.923564
1398	10			90	0.90298
1400	18			81	0.999994
1410		16		83	0.999991
1414		83	16		0.999991
1436			10	90	0.90298
1437	10			90	0.90298
1545	12		87		0.999964
1565		68		31	1.0
1673		87	12		0.999964
1675	87		12		0.999964
1682	81	18			0.999994
1685		18		81	0.999994
1687	27		9	63	1.0
1688	27	63	9		1.0
1689			27	72	1.0
1690			27	72	1.0
1695	81		18		0.999994
1697		18	18	63	0.999997
1701	22			77	0.999999
1702	77	22			0.999999
1743		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
475	486	ACA ACA ACA ACA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain