SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6976

Length: 849 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6976 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dirigent-like protein n=2 Tax=Picea sitchensis RepID=A6YR02_PICSI	-	-	65%
FL-Next	tr=Dirigent-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	dirigent-like protein	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant disease resistance response protein	IPR004265	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
59		50		50	1.0
75		16	83		0.994512
101		50		50	1.0
117	50		50		1.0
147	40		60		1.0
166		40	60		1.0
293		11	88		0.923564
377	88		11		0.923564
441		75		25	1.0
475	37		62		1.0
517	42			57	1.0
570			55	44	1.0
592	50		50		1.0
595		50		50	1.0
663			27	72	1.0
698	28		71		1.0
702		14		85	0.993533
703	57		28		1.0
706	85			14	0.993533
712		66	33		1.0
734		25		75	0.996473
740	25			75	0.996473
741		25		75	0.996473
742	25		75		0.996473
743	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain