SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6881

Length: 1386 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6881 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	carbon catabolite repressor protein 4-like 1 [Arabidopsis thaliana] sp\|Q8W0Z9.1\|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 gb\|AAL58932.1\|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] gb\|AAM9136	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Poly(A)-specific ribonuclease.	EC:3.1.13.4	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	poly(A)-specific ribonuclease activity	GO:0004535	Molecular Function	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A800

Fln msg:

Fln protein: MLVCGDFNSTPGSAPHELLATGRVEPSHPELTTDPLGILRPASKLCHRLPLVSAYSSSFSRMVGGGSSLDRQRKRMDPATNEPLFTNCTQTFIGTLDYIFYTADSLTVESLLELLDEGSLRKDTALPSPKWSSDHTALLAEFSCRPRLRR*

Protein Length: 152

Fln nts: CGTCGTGACCTTGGCTGTCAagtTTTTTTTGCACCTGAATTTGAAAAGTATGGATATGACGCTGTTTATAAGAAAAAGACCACAGAGGTATATACACGTTCAACATATGTAATTGATGGGTGTGCAACATTTTTCCGCCGTGAGCGCTTCTCACTAGTGAAGAAATATGAGGTTGAATTCAATAAAGCTGCACAATCTGTGGCAGAGGTACTTGTGCCAACAGGTCAGAAAAAGTCTGCTTTCCATCGGTTGCTCAAGGACAATGTTGCATTGATTGTAGTTTTGGAGGCCAAGGACATAAACCCTGGTCTTGATGGTTCTTCAGCAAAGAGCCAACTTCTCTGTGTGGCAAACACACATATTATCAGTAATCCGGATCTCAAAGATGTCAAACTGTGGCAGGTGCATACGCTTCTGAAAGGACTTGAAAAGATAGCTGACAGTGCAGATATTCCT_-_ATGCTGGTTTGCGGTGACTTCAACTCTACCCCTGGAAGTGCCCCTCATGAACTACTTGCAACTGGACGGGTTGAACCATCGCATCCAGAGTTGACGACAGATCCTCTTGGTATTTTACGCCCTGCAAGCAAGCTTTGCCACCGACTCCCTCTGGTTAGTGCCTATTCATCTTCCTTTTCTAGAATGGTTGGAGGAGGATCAAGCCTTGATCGTCAACGAAAACGAATGGATCCTGCAACTAATGAACCTTTATTCACCAATTGTACCCAGACGTTTATTGGAACCCTTGATTACATTTTCTATACAGCGGATTCATTAACAGTGGAGTCTCTACTGGAGCTATTGGACGAGGGGAGTCTAAGGAAGGACACGGCACTTCCATCACCTAAGTGGTCTTCTGATCACACTGCACTTTTGGCAGAGTTCAGCTGCAGGCCGAGGTTGCGACGATAA___TGAGTTGATGCAGATGTTGTGTGACACAAGCATTTTCGTTCTCTAGGAAGCCCAAGAATCGGCTGATGATTTTGCATCTTGTGGTTAGGTCTATGAACAAATTGTTGATTTTATGTAGCTTCTGTGGAATTTACTTTTCCATATAATCACATACTGCAGTGGAGAAGGTATAGCATGTATCCTGTTAACACACAATTCCATGTTCCACATTGTGCCTTTGGGTCCATTTGAAGAATGCCGTGCACATGTACAATTTATAAAAGCACAAGGTTCTGGGGCATGAAAAAGGTCACCGATAATGTAACAATAATAACAATAATAAGAGCCATCTTATGTTTTTTCTTTATGTATGACACTAACATATGTTGTACATACGAAAAGGTAATGACACCGAGGCTGGAGCACATCTTTTAACATGCCATGCCAGTTTTTGGTAGATTATTATTTGATCTATAATTGGAAGCATATTTTAACTTT

Fln Alignment:

Contig6881___MLVCGDFNSTPGSAPHELLATGRVEPSHPELTTDPLGILRPASKLCHRLPLVSAYSSSFSRMVGGGSSLDRQRKRMDPATNEPLFTNCTQTFIGTLDYIFYTADSLTVXXXXXXXXXXXLRKDTALPSPKWSSDHTALLAEFSC
D5A800______________MLVCGDFNSIPASAPHALLATGKVEPSHPDLTTDPLGILRPASKLCHQLPLVSAYSS-FARMVGVGQGLEHQRRRMDPATNEPLFTNCTRDFLGTLDYIFYTADSLMVESLLELLDEESLRKDTGLPSPEWSSDHIALLAEFRC

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
542		11		88	0.923564
758			88	11	0.923564
759	88		11		0.923564
766	85	14			0.993533
770		14	85		0.993533
773	12	87			0.992554
774			12	87	0.992554
775	87		12		0.992554
776	85			14	0.993533
778	14	85			0.993533
779	85	14			0.993533
782		14	85		0.993533
823	83			16	0.994512
832	16			83	0.994512
841		83	16		0.994512
844	16			83	0.994512
845		16	83		0.994512
848		16		83	0.994512
906	75		25		0.996473
1005		12		75	0.975346
1108		12		87	0.999964
1115	87			12	0.999964
1116	87		12		0.999964
1119		86	13		0.999973
1120	86	13			0.999973
1122		86	13		0.999973
1124			13	86	0.999973
1128	14	85			0.999981
1143	10		90		0.90298
1145	88			11	0.923564
1146	88	11			0.923564
1155		14		85	0.993533
1195	12			87	0.992554
1199			87	12	0.992554
1200		87		12	0.992554
1244		28		71	1.0
1363	75			25	0.996473
1366			66	33	0.997452
1367	66	33			0.997452
1368			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain