SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6874

Length: 1221 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group]	-	-	65%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	callose synthase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	80%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	80%
Blast2go	cell plate	GO:0009504	Cellular Component	80%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-
Sma3		IPR015706	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Distance to subject end: 1090 aas, your sequence is shorter than subject: 406 - 1964

Fln protein: GWQRLNFVESRSFWHIFRSFDRMWTFFILALQAMIIISWHGTGSPTEIFNGSVFKEVLSVFITSSILKFLQAILDIIFSWKARQSMKYREILRYILKAVVAAAWVIILPACYVHTWENPTGLVKTFQNWASGWNFPSLYILAVAIYLLPNALAAVLFMFPMLKRCIERSNWRICTILTWWQQPRLYVGRGMHESFSSLFKYTMFWILLLISKLAFSYYIEIRPLVKPTKEIMRMNIGNYEWHELFPQARKNIGVVIALWAPIVLVYFMDIQIWYAIYSTIFGGIYGAFRRLGEIRTLGMLRSRFRSLPLAFYAHLVPPTEKQENQKRSIKTLLSRKFDEVKSNETKAFANFAQLWNQVITSFRAEDLINQREMDLLLVPYSSNPDSDLIQWPPFLLASKIPIALDM

Protein Length: 407

Fln nts: TGGATGGCAAAGACTAAATTTTGTTGAAAGTCGATCGTTCTGGCATATTTTTAGAAGTTTTGATAGGATGTGGACGTTTTTTATATTGGCTCTACAGGCAATGATAATTATATCATGGCATGGTACAGGCTCACCAACTGAAATATTCAATGGCTCTGTCTTTAAAGAGGTTCTGAGTGTCTTTATAACGTCTTCTATACTCAAGTTCTTGCAAGCGATTCTTGATATAATTTTTAGCTGGAAAGCAAGACAATCTATGAAATATAGAGAGATTCTGAGATATATATTGAAGGCTGTGGTTGCTGCTGCATGGGTCATCATTCTTCCAGCTTGTTATGTCCACACCTGGGAGAATCCTACTGGTCTTGTCAAAACTTTCCAGAACTGGGCTAGCGGGTGGAATTTCCCTTCCTTGTATATCTTAGCTGTTGCAATATATTTGTTACCTAATGCACTTGCAGCAGTCCTGTTCATGTTTCCCATGCTGAAGCGGTGTATTGAAAGGTCAAATTGGCGCATTTGTACTATTCTGACATGGTGGCAACAGCCACGACTCTATGTTGGACGGGGAATGCATGAGAGCTTCTCATCCCTTTTCAAGTACACAATGTTTTGGATTCTACTTCTTATAAGCAAGCTAGCTTTTAGCTACTACATTGAGATAAGGCCACTGGTTAAGCCTACAAAGGAGATCATGCGGATGAATATTGGCAACTATGAATGGCATGAGCTTTTTCCACAAGCAAGAAAGAACATTGGCGTGGTGATTGCCCTCTGGGCTCCAATAGTACTTGTTTATTTCATGGACATACAAATTTGGTATGCCATCTACTCAACTATCTTTGGAGGTATCTATGGTGCCTTTCGCCGACTTGGTGAGATACGAACATTGGGGATGCTGAGGTCAAGATTCCGATCTTTGCCTCTAGCTTTCTATGCACATTTAGTACCGCCTACAGAAAAACAAGAGAATCAGAAAAGGAGTATAAAAACGTTATTGTCAAGAAAGTTTGATGAGGTTAAATCAAATGAAACAAAAGCATTTGCAAACTTTGCTCAGTTATGGAATCAAGTTATTACTAGTTTCCGTGCTGAGGATTTGATAAACCAGAGAGAGATGGATCTATTGCTCGTACCGTATTCTTCAAATCCCGATTCAGATCTTATCCAGTGGCCACCATTCTTACTTGCTAGCAAGATACCTATAGCATTAGACATGGC

Fln Alignment:

Contig6874___RLNFVESRSFWHIFRSFDRMWTFFILALQAMIIISWHGTGSPTEIFNGSVFKEVLSVFITSSILKFLQAILDIIFSWKARQSMKYREILRYILKAVVAAAWVIILPACYVHTWENPTGLVKTFQNW-ASGWNFPSLYILAVAIYLLPNALAAVLFMFPMLKRCIERSNWRICTILTWWQQPRLYVGRGMHESFSSLFKYTMFWILLLISKLAFSYYIEIRPLVKPTKEIMRMNIGNYEWHELFPQARKNIGVVIALWAPIVLVYFMDIQIWYAIYSTIFGGIYGAFRRLGEIRTLGMLRSRFRSLPLAFYAHLVPPTEKQENQKRSIKTLLSRKF--DEVKSNETKAFANFAQLWNQVITSFRAEDLINQREMDLLLVPYSSNPDSDLIQWPPFLLASKIPIALDM
Q9LXT9______________KVNFVEIRSFWHVFRSFDRMWSFYILCLQAMIIMAWDG-GQPSSVFGADVFKKVLSVFITAAIMKLGQAVLDVILNFKAHQSMTLHVKLRYILKVFSAAAWVIILPVTYAYSWKDPPAFARTIKSWFGSAMHSPSLFIIAVVSYLSPNMLAGVMFLFPLLRRFLERSNYRIVMLMMWWSQPRLYVGRGMHESAFSLFKYTMFWVLLIATKLAFSYYIEIRPLVAPTQAIMKARVTNFQWHEFFPRAKNNIGVVIALWAPIILVYFMDSQIWYAIFSTLFGGIYGAFRRLGEIRTLGMLRSRFESLPGAFNDRLIPDGKNQQ-KKKGIRATLSHNFTEDKVPVNKEKEAARFAQLWNTIISSFREEDLISDREMDLLLVPYWADRDLDLIQWPPFLLASKIPIALDM

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
383	33	66			0.997452
385			66	33	0.997452
386	66		33		0.997452
387	66			33	0.997452
529	20			80	0.995493
532			20	80	0.995493
533		80		20	0.995493
872		66		33	0.997452
874	33		66		0.997452
875	66			33	0.997452
911	66		33		0.997452
1048			14	85	0.993533
1056		11	11	77	0.968132
1058		11		88	0.923564
1062		88	11		0.923564
1064		11	88		0.923564
1065		11		88	0.923564
1071	88			11	0.923564
1072	88		11		0.923564
1076	88			11	0.923564
1077		12	87		0.992554
1078	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain