SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6697

Length: 1548 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6697

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	carboxypeptidase D [Arabidopsis thaliana] sp\|Q949Q7.1\|SCP29_ARATH RecName: Full=Serine carboxypeptidase-like 29; Flags: Precursor gb\|AAK93635.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM91708.1\| putative serine carboxypeptidase II	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	serine carboxypeptidase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	84%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKI4

Fln msg:

Fln protein: MEQDGQYSVLRVTRCECFSYTNTSSDLQTSGDKRTAEDAYVFLINWLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKSVINFKGFMVGNAVTDDYHDFIGTFEYWWSHALISDSTYKLLKETCDFTSSQHPSNQCQKAMDLADSELGNIDQYSIYTRSCNSSGSQRHKMRSHHPWRSYGYDPCTERYSTLYFNRPEVQKALHANVTSISYSWTTCSDPLEKYWRDSPRSMLPIYQELLRAGIRIWVFSGDTDAVVPVTATRYSIDALRLRTIVNWYPWYDNQEVGGWTQIYKGLTLVTIRGAGHEVPLHQPRKAFILFKAFLEGKPMPTYRTFFRKL*

Protein Length: 348

Fln nts: TTCTACTGGTTGACTGAAGCTCCCAAAAACCCATCATCAAAACCACTGGTTTTATGGCTCAATGGAGGCCCCGGATGCTCGTCTGTGGCATATGGAGCTGCAGAAGAACTGGGTCCCTTCCATATTCGATCTGATGGGAAGACATTGTATCTTAATCCATATGC_-_ATGGAACAAGATGGCCAATATTCTGTTCTTAGAGTCACCCGCTGTGAGTGTTTCTCCTACACAAACACTTCTTCTGATTTACAAACATCAGGAGACAAGAGAACTGCTGAAGATGCATACGTTTTCTTAATCAACTGGTTAGAAAGATTTCCTCAATATAAGTACAGGGACTTCTATATAGCCGGTGAGAGCTATGCAGGGCATTATGTTCCACAGTTGGCACAAGTAGTCTACAGAAACAACAAGGGCCTTCAAAAGTCAGTTATCAATTTCAAGGGTTTCATGGTTGGCAATGCAGTTACTGATGACTACCATGACTTCATAGGGACTTTTGAATATTGGTGGTCTCATGCCTTGATATCTGATTCTACCTATAAGTTGCTGAAAGAAACATGTGACTTCACATCATCGCAACATCCATCTAATCAATGCCAAAAAGCTATGGATTTGGCTGATTCGGAGCTAGGAAATATCGATCAGTATAGCATTTATACACGATCCTGCAATAGTTCTGGAAGTCAAAGACATAAAATGCGGAGCCACCACCCTTGGAGGTCATACGGGTATGATCCATGCACTGAAAGATATTCAACACTGTACTTTAATCGACCTGAAGTACAAAAGGCACTTCATGCCAATGTTACAAGCATTTCGTACAGCTGGACAACTTGCAGTGACCCACTGGAGAAATACTGGCGAGATTCACCTAGATCAATGCTCCCTATTTACCAGGAGCTACTCAGAGCTGGTATTCGTATTTGGGTATTCAGTGGAGACACTGATGCAGTAGTCCCAGTGACAGCAACCAGATATTCTATAGATGCTTTGCGGCTCCGCACTATAGTAAATTGGTATCCATGGTATGACAATCAGGAGGTTGGAGGATGGACTCAAATATACAAAGGGCTGACTCTTGTGACAATCAGAGGGGCTGGGCATGAAGTACCACTTCATCAACCTCGAAAAGCCTTCATACTCTTCAAAGCATTCTTAGAAGGCAAACCTATGCCAACCTACAGAACATTCTTTCGTAAATTGTAG___CCTTAAAAGACCTCCCTTGGAAGTGCTCTGATTATTTCTTACCCTCTGGCTTATTTACTGGGGGATGTAATTGTTTTATAAGATTAGATTGAATTTAAACTGGTTGTTCTCATTTATTGTAACATGGGTTTCCTTACTGAGCCTCTAATGTTACTCAGTGACTAACTCAAAAGTAAATCATTTTTAGTATCAGCCTGCCCACACAAGGGTCTATCCAAGACAGGGTAAGTGGAATAGATATTATTCTCACTTATTTCCTTTTACCAATTCTTATGTCTTGTATTATTTATTATACTAAATTTGTATCCTTATAATAAAATTGAATCCTAATAATATTTGCAGC

Fln Alignment:

Contig6697___FSYTNTSSDLQTSGDKRTAEDAYVFLINWLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKSVINFKGFMVGNAVTDDYHDFIGTFEYWWSHALISDSTYKLLKETCDFTSSQHPSNQCQKAMDLADSELGNIDQYSIYTRSCNSSGSQRHKMRSHHPWRSYGYDPCTERYSTLYFNRPEVQKALHANVTSISYSWTTCSDPLEKYWRDSPRSMLPIYQELLRAGIRIWVFSGDTDAVVPVTATRYSIDALRLRTIVNWYPWYDNQEVGGWTQIYKGLTLVTIRGAGHEVPLHQPRKAFILFKAFLEGKPMPTYRTFFRKL
A9NKI4______________FSYTNTSSDLQTTGDKRTAEDAYVFLIKWLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKPIINFKGFMVGNAVTDDYHDFIGTFEYWWSHALISDSTYKLLKETCDFTSSQHPSDQCQRAMDLADLELGNIDQYSIYTPSCNISGSQRHKLRSHHPWRSYGYDPCTESYSALYFNRPEVQKAFHANVTSISYSWTTCSDILEKYWQDSPRSMLPIYQELLRAGIRIWVFSGDTDAVVPVTATRYSIDALRLRTIVNWYPWYDNQEVGGWTQIYKGLTLVTIRGAGHEVPLHQPRKAFILFKAFLKGKPMPTSRTFFRKL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
299		80		20	0.995493
478	87		12		0.992554
626		12		87	0.992554
955	85		14		0.993533
1035	88		11		0.923564
1049			90	10	0.90298
1050			90	10	0.90298
1051	90			10	0.90298
1139		25		75	1.0
1148		12		87	0.992554
1168	12	87			0.992554
1173		80	20		0.999996
1175	80		20		0.999996
1180	80			20	0.999996
1181	80		20		0.999996
1182		80	20		0.999996
1185	80			20	0.999996
1188		11	77		0.968132
1189	77	11		11	0.968132
1190	77	11		11	0.968132
1191	11	88			0.923564
1435	12		87		0.992554
1511	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain