SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6574

Length: 689 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6574 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol oxidase (Fragment) n=1 Tax=Glycine max RepID=C6F118_SOYBN	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	long-chain-alcohol oxidase fao4a-like	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Alcohol dehydrogenase, long-chain fatty	IPR012400	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
669	33	66			0.997452
671	33			66	0.997452
676	33			66	0.997452
677	66		33		0.997452
680	33	33			0.997753
681	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain