SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6568

Length: 1110 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6568

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	amp dependent	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	80%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	80%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	80%
Blast2go	Phenylalanine metabolism	00360	80%
Blast2go	Phenylpropanoid biosynthesis	00940	80%
Blast2go	Biosynthesis of phenylpropanoids	01061	80%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	80%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	GO:0047077	Molecular Function	80%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: your sequence is shorter than subject: 368 - 540

Fln protein: VQKSPPEVIIKQTDTAALLYSSGTTGANKGAVLTHRNFMAAGLMATSEQELKGERHLTYLCLLPMFHVYGLSCVTYGQLQRGNAVVSMGKFSFVRMLEVIQEYKITHLPIVPPIVIAVAKEKIVARYDLSSLKEVISGAAPLGKDIMEECANKIPQTSMVQGYGLTESCGIATITLPKEGNRHFGSAGALVPGLEAKIVNLETGKPLPPNQRGEVWLRGPNIMTGYFNNPSATKMTLDTEGWLHTGDMGYFDEEGGLFIVDRIKELIKYKGFQVAPAELEGLLLTHPQIADAGVIPLPDLKAGEVPIAYVVRTPGSSLTEKDAMDYIAKQVAPFKRLHRVNFVESIPKSASGKILRRELIAKAKSKL*

Protein Length: 369

Fln nts: GTGCAAAAGAGCCCACCTGAGGTTATTATCAAGCAGACAGACACGGCTGCACTATTGTATTCTTCTGGGACTACTGGGGCCAACAAAGGGGCGGTCTTAACTCATAGGAATTTCATGGCAGCTGGTTTAATGGCGACCTCTGAGCAAGAGTTGAAGGGCGAAAGGCATTTGACATACTTATGTCTTCTTCCTATGTTCCATGTATACGGGCTGTCATGTGTCACATATGGGCAGCTTCAGAGAGGTAATGCTGTGGTTTCGATGGGGAAATTTTCTTTTGTTAGAATGCTGGAGGTCATTCAAGAATATAAGATAACCCATTTGCCTATAGTGCCACCCATTGTGATTGCGGTTGCAAAAGAGAAAATTGTGGCACGATATGATCTGTCTTCTTTGAAGGAGGTTATCAGTGGAGCAGCACCCTTGGGCAAAGATATCATGGAGGAATGTGCCAATAAAATTCCACAAACCAGTATGGTTCAGGGTTATGGCCTAACTGAATCTTGTGGCATTGCAACAATCACATTACCAAAAGAAGGGAATAGACACTTTGGATCGGCAGGAGCATTAGTTCCAGGACTTGAAGCAAAAATTGTAAATCTGGAAACAGGGAAGCCTCTCCCCCCTAATCAGCGAGGAGAAGTGTGGCTTCGTGGGCCCAATATTATGACAGGATACTTTAACAACCCCAGTGCAACTAAAATGACACTAGATACGGAAGGATGGCTGCATACTGGAGATATGGGCTACTTTGATGAGGAAGGAGGATTATTTATTGTGGATCGTATTAAGGAACTAATCAAATACAAAGGGTTCCAGGTTGCCCCTGCTGAGTTGGAGGGCTTATTGTTGACACATCCCCAAATTGCAGATGCTGGAGTTATTCCCCTTCCTGATCTAAAAGCTGGAGAGGTTCCAATCGCATATGTTGTACGTACCCCTGGAAGCTCTTTGACGGAAAAAGATGCCATGGATTATATCGCTAAGCAGGTCGCACCATTTAAAAGGTTGCATAGAGTCAATTTTGTAGAATCTATACCCAAGTCTGCCTCAGGGAAGATTCTTCGACGAGAGCTTATTGCTAAGGCCAAATCAAAATTGTAA___GCAAAG

Fln Alignment:

Contig6568___QKSPPEVIIKQTDTAALLYSSGTTGANKGAVLTHRNFMAAGLMATSEQELKGERHLTYLCLLPMFHVYGLSCVTYGQLQRGNAVVSMGKFSFVRMLEVIQEYKITHLPIVPPIVIAVAKEKIVARYDLSSLKEVISGAAPLGKDIMEECANKIPQTSMVQGYGLTESCGIATITLPKEGNRHFGSAGALVPGLEAKIVNLETGKPLPPNQRGEVWLRGPNIMTGYFNNPSATKMTLDTEGWLHTGDMGYFDEEGGLFIVDRIKELIKYKGFQVAPAELEGLLLTHPQIADAGVIPLPDLKAGEVPIAYVVRTPGSSLTEKDAMDYIAKQVAPFKRLHRVNFVESIPKSASGKILRRELI
B8LNP4______________QKNPPEVIIEQTDTAALLYSSGTTGTNKGVVLTHRNFIASALMVISDQELEGERHLTHLCLVPMFHVYGLGCIVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEECAKRIPQAAVTQGYGLTESCGIATITFPKERNSHFGSAGTLVPGLEAKIVNLETGRSLPPNQSGEVWLRGPNIMTGYFNNPNATKMTLDKEGWLHTGDMGYFDDEGGLFIVDRIKELIKYKGFQVPPAELEGLLLTHPQIVDAGVIPLPDLNAGEVPIAYVVRTPGSSLTEKDVMAYVAKQVAPFKRLHRINFVDSIPKSSSGKILRRELI

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
479	33		66		0.997452
524	75			25	0.996473
526	75		25		0.996473
528			33	66	0.997452
533	66			33	0.997452
534	66			33	0.997452
535	66		33		0.997452
537	66	33			0.997452
538	66			33	0.997452
540			66	33	0.997452
541		33	66		0.997452
543	66	33			0.997452
546		33	66		0.997452
624		75	25		0.996473
625		75		25	0.996473
627		75	25		0.996473
630	75	25			0.996473
632		75		25	0.996473
633	75		25		0.996473
636			75	25	0.996473
637	75		25		0.996473
638			75	25	0.996473
639		25	75		0.996473
641		25	75		0.996473
642	75			25	0.996473
643	75	25			0.996473
644	25		75		0.996473
645		20		80	0.995493
648		20	80		0.995493
650		80		20	0.995493
651			20	80	0.995493
652	20			80	0.995493
654		20	80		0.995493
656			80	20	0.995493
660		80		20	0.995493
661		80	20		0.995493
662	80			20	0.995493
663	80	20			0.995493
664	20			80	0.995493
665	80	20			0.995493
667		20		80	0.995493
678	80			20	0.995493
680			20	80	0.995493
681		20		80	0.995493
690		66	33		1.0
691		66		33	1.0
692	66	33			1.0
698	66	33			1.0
701	66			33	1.0
702	66		33		1.0
703	66		33		1.0
704	66	33			1.0
707	66			33	1.0
891			12	87	0.992554
894		87	12		0.992554
898		12		87	0.992554
903	87			12	0.992554
904	87		12		0.992554
909		12	87		0.992554
911		12	87		0.992554
912	87			12	0.992554
913		12	87		0.992554
914	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain