SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6460

Length: 398 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene6460
ATGGGTGGCTGTGGATCCAAGTTCCTCCTACAAGCTCTCCTTGCGCCCGAGTATGCGGAAGTACACCTCAGATAATAGGAGTCTGGACGTCCTTAATTGGACAAAATACAGGCCTTGTTTCTTAAATCGGCAAATCATTACGCTTTTGTCTACTTTGGGTGTTGCAGGTCATCACTTCGAGACGCTTCAGAAAGAAGCAATAGAACTCATAAATCAAGTCTTAACAAGCAGAGATGAGGCTCTTGACGTGCTACAAACTTTGTACACAGGTGAAAATCATAATGCTCTTACGGATATGCTTTCATGTGGCTACTCCCCAAAATCGGAGCCTTACCTATCAATGATGCTTCAGGCATTTCGAGCATCTAAACTTGTGGAGTTAAGAAACAAGGCACGCA

Ace file of the UniGene sp_v2.0_unigene6460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI	-	-	3.0e-39	61%
FL-Next	sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	rna-dependent rna polymerase	-	-	4.2039e-45	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	4.2039e-45	74%

Source	KEGGs	Term	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	4.2039e-45	74%
Blast2go	Lipopolysaccharide biosynthesis	00540	4.2039e-45	74%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	4.2039e-45	74%
Blast2go	Metabolic pathways	01100	4.2039e-45	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.2039e-45	74%
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	4.2039e-45	74%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LQV2

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 132 - 1107

Fln protein: WVAVDPSSSYKLSLRPSMRKYTSDNRSLDVLNWTKYRPCFLNRQIITLLSTLGVAGHHFETLQKEAIELINQVLTSRDEALDVLQTLYTGENHNALTDMLSCGYSPKSEPYLSMMLQAFRASKLVELRNKAR

Protein Length: 133

Fln nts: ATGGGTGGCTGTGGATCCAAGTTCCTCCTACAAGCTCTCCTTGCGCCCGAGTATGCGGAAGTACACCTCAGATAATAGGAGTCTGGACGTCCTTAATTGGACAAAATACAGGCCTTGTTTCTTAAATCGGCAAATCATTACGCTTTTGTCTACTTTGGGTGTTGCAGGTCATCACTTCGAGACGCTTCAGAAAGAAGCAATAGAACTCATAAATCAAGTCTTAACAAGCAGAGATGAGGCTCTTGACGTGCTACAAACTTTGTACACAGGTGAAAATCATAATGCTCTTACGGATATGCTTTCATGTGGCTACTCCCCAAAATCGGAGCCTTACCTATCAATGATGCTTCAGGCATTTCGAGCATCTAAACTTGTGGAGTTAAGAAACAAGGCACGCA

Fln Alignment:

Contig6460___VAVDPSSSYKLSLRPSMRKYTSDNRSLDVLNWTKYRPCFLNRQIITLLSTLGVAGHHFETLQKEAIELINQVLTSRDEALDVLQTLYTGENHNALTDMLSCGYSPKSEPYLSMMLQAFRASKLVELRNKAR
Q9LQV2______________VAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain