SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6392

Length: 1594 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6392 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative pectate lyase 18 [Arabidopsis thaliana] ref\|NP_001190827.1\| putative pectate lyase 18 [Arabidopsis thaliana] sp\|Q9C5M8.2\|PEL18_ARATH RecName: Full=Probable pectate lyase 18; AltName: Full=Pectate lyase A10; Flags: Precursor gb\|AAW38990.1\| At4g247	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	pectate lyase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectate lyase.	EC:4.2.2.2	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	pectate lyase activity	GO:0030570	Molecular Function	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg:

Fln protein: MSNQICILSCMLLIGILRSVHGGAPKPFESKYGEKFMGRKIVEAPANITRSMFPVEKDESNGAKIVHQSIINNSTRGGQELTVLSCATGNPIDDCWRCDPNWERNRKRLADCGIGFGKHAIGGKNGKFYVVTNAGDDAVNPSKGTLRHAVIQTEPLWIIFHNDMVIQLKEELVIHSFKTIDGRGAKVHIGKGPCITIKDATNIIIHGIHIHDCKSVGNAAVNMYPLKSGSRKINHGDGISISTARHIWVDHCSMSNCEDGLIDAVKASTFITISNNYFTRHNKVMLLGHSDDHHHDKVMQATVALNHFGKGLVQRMPRCRFGYFHVFNNDYAEWGMYAIGGSSNPTILSQGNRFMASANPFAKEVTKRQNTAESEWKKWNWTSEDDVLLNGAYFTPSGSQVLSTYTAAYSARPKSSAVVEEITRNAGVLSCKKGTRC*

Protein Length: 439

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGCAGAAGCAACCACCACCAGTGTTGTTAGTGTTTTTGTTTTCTTGAGAAGACAAAGCTGAGTACTGGCTGTCAAA_-_ATGAGCAATCAAATTTGTATTTTGAGCTGCATGCTGTTGATTGGAATACTCCGCTCCGTTCATGGCGGGGCGCCAAAGCCATTTGAATCAAAATATGGAGAGAAGTTTATGGGACGGAAGATAGTCGAGGCACCGGCCAATATAACTAGATCCATGTTTCCTGTGGAGAAAGATGAGAGCAACGGAGCGAAAATAGTTCACCAAAGCATTATTAACAACAGTACAAGAGGAGGACAGGAGCTGACTGTATTGTCATGTGCAACTGGTAATCCCATCGATGACTGTTGGCGCTGCGACCCCAATTGGGAGCGCAACAGAAAACGGCTGGCAGATTGCGGCATTGGATTTGGCAAGCATGCCATCGGAGGCAAAAACGGCAAGTTTTATGTCGTTACGAATGCCGGTGACGACGCCGTGAATCCATCCAAAGGTACACTGCGTCATGCCGTGATTCAGACTGAGCCGCTGTGGATCATCTTCCACAATGACATGGTCATCCAGCTCAAGGAAGAGCTCGTTATTCACAGCTTCAAAACAATCGATGGACGAGGCGCCAAAGTCCACATTGGTAAGGGCCCGTGTATCACCATAAAAGATGCGACAAACATCATCATTCATGGCATCCACATTCATGACTGTAAAAGTGTAGGAAACGCTGCGGTAAATATGTATCCTCTGAAGAGTGGGTCGAGAAAAATAAATCATGGAGATGGGATTTCAATCTCGACAGCGAGGCACATATGGGTGGACCATTGCTCTATGTCTAACTGCGAAGATGGCCTCATTGACGCAGTCAAGGCATCCACCTTTATCACCATTTCCAACAATTATTTCACTCGCCACAACAAGGTGATGCTATTGGGTCACAGTGACGACCACCATCATGACAAAGTTATGCAGGCAACGGTTGCACTCAACCATTTTGGCAAAGGTCTCGTGCAACGAATGCCAAGGTGCCGATTTGGATACTTCCATGTGTTTAACAATGATTACGCTGAGTGGGGAATGTATGCCATCGGTGGAAGTTCAAACCCCACAATTCTAAGTCAAGGCAATAGATTTATGGCATCTGCAAATCCCTTTGCTAAAGAAGTAACCAAGAGGCAAAACACCGCAGAAAGTGAATGGAAAAAGTGGAACTGGACATCAGAAGATGATGTGCTGCTAAATGGTGCATATTTCACGCCATCAGGATCGCAGGTGCTTTCGACCTATACAGCTGCATACAGTGCCAGACCAAAAAGTTCAGCCGTTGTGGAAGAGATCACCAGGAACGCAGGCGTtCTCTCGTGCAAGAAAGGAACTCGCTGCTAA___CTGCAACTTCTTACCCGCCATTATCACCGCTGAATTTGAGTGCCCTCAAACATTGTCATTACTTTTCATAACTGTACCGTCTTCTTTGAAAGTCTCCCTTCTCACAGTTCCAAGAAATGATCGGAGCTGTTATGCATTGCTTGCAACTTTCGTTATAAATTATGAGCAATTACTTCAC

Fln Alignment:

Contig6392___ILSCMLLIGILRSVHGGAPKPFESKYGEKFMGRKIVEAPANITRSMFPVEKDESNGAKIVHQSIINNSTRGGQELTVLSCATGNPIDDCWRCDPNWERNRKRLADCGIGFGKHAIGGKNGKFYVVTNAGD-DAVNPSKGTLRHAVIQTEPLWIIFHNDMVIQLKEELVIHSFKTIDGRGAKVHIGKGPCITIKDATNIIIHGIHIHDCKSVGNAAVNMYPLKSGSRKINHGDGISISTARHIWVDHCSMSNCEDGLIDAVKASTFITISNNYFTRHNKVMLLGHSDDHHHDKVMQATVALNHFGKGLVQRMPRCRFGYFHVFNNDYAEWGMYAIGGSSNPTILSQGNRFMASANPFAKEVTKRQNTAESEWKKWNWTSEDDVLLNGAYFTPSGSQVLSTYTAAYSARPKSSAVVEEITRNAGVLSCKKGTRC
B8LQ36______________ILSCMLLIGILCIHSGAAEKPFGSLFAENSREAGLANTTA--------VEEDPESVVQMVQRSIDNSTRR--RELGYLSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRDALGGKHGSFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQGNAMVRDSPTHYEWRT-SDGDGISIFGGSHVWVDHVSLSNCADGLIDATMGSTAITISNSYFTHHNEVMLLGHSDSHTSDVKMRVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGAYFTPSGAGESSAYIRASSLPARPSSLVGPLTQNAGVLFCRKGGRC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1440		37	62		1.0
1454	87			12	0.992554
1457	12	87			0.992554
1463		75	25		1.0
1470	12	87			0.992554
1480	87			12	0.992554
1485			12	87	0.992554
1501		50		50	1.0
1508			12	87	0.992554
1526		87		12	0.992554
1530	85		14		0.993533
1537	71	28			1.0
1542	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain