SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6309

Length: 893 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6309

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins	-	-	4.0e-08	34%
FL-Next	sp=Universal stress protein A-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	universal stress protein family protein	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
25	66			33	1.0
363			83	16	0.994512
364	16			16	0.988813
496		81		18	0.999994
497		78		21	1.0
498	71		21	7	1.0
500	71	21		7	1.0
502	78		21		1.0
504	28			71	1.0
507	78	21			1.0
508	21		78		1.0
523		17	82		1.0
527			17	82	1.0
531	15		84		1.0
536			15	84	1.0
537		84	15		1.0
539	83			16	1.0
541	83			16	1.0
542		16	83		1.0
543	16		83		1.0
544		16	83		1.0
595	13		86		0.999973
832			15	84	0.999986
837	88			11	0.923564
839	33			66	0.997452
840	33			66	0.997452
847		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain