SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6217

Length: 288 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene6217
ATGGGGATTTTCACTGCATGGAACAAGAAGAAAAGATTCAATACGAGCTGGAGAATTCATGGCATGCCAGTGTTTCCAGAGTAGAAGCAAAGAGATATTGTCAAGGGTATAGTTCAGATTATGCACGCATAGCCAAAAGTGTTTATAAGTAGGCTGCCCAGAGTAAACAATCAAAAGATTTTAGAATTGGCTAAACAGGACTTCAACATTATCCAGGCAATTCATCAAAAAGAGATGAAGCATGTCAAAAAGAGATGAAGCATTGCTGGACGAGATTGCAAGTCTTTG

Ace file of the UniGene sp_v2.0_unigene6217

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E-alpha-bisabolene synthase n=1 Tax=Picea abies RepID=Q675L6_PICAB	-	-	1.0e-20	65%
FL-Next	tr=(E)-beta-farnesene synthase 2; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	77%
Blast2go	a chain structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production	-	-	2.61435e-21	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-bisabolene synthase.	EC:4.2.3.38	-	2.61435e-21	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Sesquiterpenoid biosynthesis	00909	2.61435e-21	81%
Blast2go	Metabolic pathways	01100	2.61435e-21	81%
Blast2go	Biosynthesis of secondary metabolites	01110	2.61435e-21	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	2.61435e-21	81%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	2.61435e-21	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.61435e-21	81%
Blast2go	alpha-bisabolene synthase activity	GO:0052681	Biological Process	2.61435e-21	81%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: F1C7P3

Fln msg: Overlapping hits, possible frame ERROR between 149 and 145, Unexpected STOP codon at 3' end. Distance to subject end: 294 aas, your sequence is shorter than subject: 86 - 825

Fln protein: GDFHCMEQEEKIQYELENSWHASVSRVEAKRYCQGYSSDYARIAKSVxxxRLPRVNNQKILELAKQDFNIIQAIHQKEMKHVKKR*

Protein Length: 87

Fln nts: ATGGGGATTTTCACTGCATGGAACAAGAAGAAAAGATTCAATACGAGCTGGAGAATTCATGGCATGCCAGTGTTTCCAGAGTAGAAGCAAAGAGATATTGTCAAGGGTATAGTTCAGATTATGCACGCATAGCCAAAAGTGTTxxxxxxxxxAGGCTGCCCAGAGTAAACAATCAAAAGATTTTAGAATTGGCTAAACAGGACTTCAACATTATCCAGGCAATTCATCAAAAAGAGATGAAGCATGTCAAAAAGAGATGAAGCATTGCTGGACGAGATTGCAAGTCTTTG

Fln Alignment:

Contig6217___EKIQYELENSWHASVSRVEAKRYCQGYSSDYARIAKSxxxLPRVNNQKILELAKQDFNIIQAIHQKEMKHV
F1C7P3______________EEIKYALENSWHASVPRVEAKRYCQVYRSDYTYLAKSxxxLPKVNNEKILELAKLDFNIIQAIHQKEMKNV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
106			50	50	1.0
129	50			50	1.0
150		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain