SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6214

Length: 883 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6214

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase MSK-3-like [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	shaggy-related protein kinase epsilon	-	-	84%

Source	ECs	Term	Type	Identity
Blast2go	[Tau protein] kinase.	EC:2.7.11.26	-	84%
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	84%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	84%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	84%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	84%
Blast2go	response to salt stress	GO:0009651	Biological Process	84%
Blast2go	tau-protein kinase activity	GO:0050321	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	84%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
14			33	66	0.997452
18	66		33		0.997452
21		33		66	0.997452
23		33		66	0.997452
24	66			33	0.997452
26	75		25		0.996473
28		25		75	0.996473
29			25	75	0.996473
32			25	75	0.996473
34		25		75	0.996473
35	75	25			0.996473
36		75		25	0.996473
37		75		25	0.996473
38		75	25		0.996473
39		75	25		0.996473
41			75	25	0.996473
43	75			25	0.996473
49		25	75		0.996473
50	25	75			0.996473
115			20	80	0.995493
117		80	20		0.995493
153	83			16	0.994512
155	83		16		0.994512
156			83	16	0.994512
159	83	16			0.994512
160	83			16	0.994512
161	83			16	0.994512
163	83		16		0.994512
164		16		83	0.994512
166	83		16		0.994512
168	83	16			0.994512
169	16			83	0.994512
172		16	83		0.994512
173	16	83			0.994512
206		11		88	0.923564
209	88	11			0.923564
210	88		11		0.923564
211	88			11	0.923564
213	11	88			0.923564
214	88	11			0.923564
216	88			11	0.923564
220		11	88		0.923564
225	11		88		0.923564
227	88			11	0.923564
228		11	88		0.923564
274		75		25	1.0
647	30		69		1.0
725		10		90	0.90298
734		90		10	0.90298
786			88	11	0.923564
787			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain