SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6036

Length: 2330 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene6036
GGGGTTCAAAGACGGGCGCCGTTGCCATTACGGGGCTGTGTTCAGTGTTTGTCTGTCCCGTGACTTGCATAGTGGATCGGGCGCTGGAAAACTGAACCAATCCGCCGTGCGATTGTGCACTGGTAATTTAGAGGATTTTTGTGGGTGTTCGTGATTTGAACGCATCCGAGGGTGTGCAGGCTGGGGATAGAGTTATCTATTGTTTAATTTATTGTTGGTGTCTGGAATTCGTGAAATCAACATCGTCACCAGTTGTTTCCAGGACTCTCGCCTTTTACAAAAGCTGCTAAATTTAAAGGCATTCAGTGTACCAGGACTCAGGACTGAAGCATATAGGGGTTTATTATTATATTGGTTGTGCGGGATTCGAACCTATAAAGTTGGGACTGGTCAAATCTGCCGCAGAAGAGGAAAACGCATATTTGCAGAAGCTGATTTCTGCTATTTTTGTTTCGGTAATGAAAGAGGCGGGTTCTTCGTCGATTCAGATGGTGAATAATATCGTGCTGGGCGTTCTATGTTTTGCTTTGCTGGGCTTTGCTACGAACGCGGCTTCTCCATTTAACGAAACCGGCTCTGATCTTGCCGGGATTCGTTTCCCGAATCACCCGCAGTCCATTCTGGACAGTCATGGTTCTAGCTGCGATCAATTCGTTGCAAATATTGAAGAAAATCCGGCGGAGAAAACAGAGGAAAAACGTTCGATGAGAGTGAAAGTCCTGCACAGAGAGCAGCGGCATGAGAGGAAAAGCAAAAAGGAAGCGTTACTGGAATCCTGCGCCAGGGATCGACACCGCGCCGGGGCCTTCCACCAGCGAGTCTTGCAGAAAGTCTCCAAATCAGGGTTCGTATCCGACGTGGCGCTCAAAGCCTCCGACGTGGCTCGCACGGCCTCCAACGTGGCATTGAACAACTCGGCTTCGGCTTTGGCTTCGAATTCCAGTACAGCACGAGGCGCGACGCAGGTGATCGCCACGCTGGAATCCGGCGTGTCGCTGGGCTCGGGTGAGTATTTCATGGACGTCTTCATCGGCACGCCACCTAAGCATTTTTCTTTAATCCTCGACACGGGTAGCGATCTCAATTGGCTTCAATGCAGTCCCTGTGAGGATTGCTATGAACAGATCGGACCAAAGTATGACCCTTCCATGTCATCCTCCTACTCAGCAATTCCCTGTTCTTCTGCACAGTGCGGTCTCGTCGCACCGCCGGAGGCGGAAGCAGCCGGTGACCGCTGTGCGGGCAACGGGCGAAACTCGTCGTCGCCTTGCCGATATTTTTACTGGTATGGTGACCGGTCCAACACCACTGGCGACCTGTCGTGGGAAACCTTTTCCGTCAACGTGACCGGCCGTCGTGGACCGTTGCGAGTACCGCGGGTCATCTTCGGCTGCGGGCATGCGAACCGGGGGCTCTTCCACGGCGCCGCCGGTCTCCTTGGTCTCGGCCGCGGGCAGCTGTCCTTCACCTCGCAGCTCCGGGAGCTTTACGGCCACAAGTTTTCCTACTGCCTCGTCGATCGTGACAGCAACGCGTCGGTCAGCAGCACCTTGGTCTTCGGTGAGGACGAGCGCCTGGTTGCCCACCGGGACCTCCAGTACACCGCCCTAATCCAGACCGCGACCTCGGTCGACACCTTCTATTACGTCCGCATCGCTGCTGTCACAGTTGGCGGCGAGCGCATCGACGTGCCATCGGGCGCCTTCGACATAACGGCGGAGGGCTACGGCGGCACCATCGTCGACTCCGGAACCACACTCACCTACCTCGTGCAGCCGGCTTACGAGAAGATCCGATCGGCGTTCGAAGCCAAGATCACCTACCCGCGCGTGGAATTCCCGCCACTCGGGCCCTGCTACAACGTTTCCGGCGTCGGTGACGTGAAGCTGCCAGAATTCAGCATTATCTTTACCGATGGGGCCGTGTGGCGGTTCCCGGCGGAGAATTATTTTATTCAGCTGGACCCGGAGGAGGCCGTGGTCTGCTTGGCCATCCTGGGGACTCCGCCGGGCTCTCTTTCAATAGTAGGGAACTACCAGCAGCAGAATTTCCACATTCTTTACGATGTTGATAATTCACGCCTCGGTTTCGCCCCCATGACGTGCGCTGCAATTTGATCCACAGAAGAAACCCCGTTGCCCGGGGTCGTCTAATCTACTTCTCCGTTGTTTTCGGTTGTCCGGAGAATTCGAACTCCGGACATGGCCGTTGCTTATCTAAATTCATTGATAGGATAGTTAATTTTTCCGGAGAAACCGTCTGAGGTTTTTCCGGGCATTTGTGATTAAGTTGGGTACACTAGTGAAATTGTGAAAATGTTTAGGGTTTTG

Ace file of the UniGene sp_v2.0_unigene6036

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] gb\|AAL11556.1\|AF424562_1 AT3g59080/F17J16_130 [Arabidopsis thaliana] emb\|CAB86936.1\| putative protein [Arabidopsis thaliana] gb\|AAM20669.1\| putative protein [Arabidopsis thaliana] gb\|AAN15645.1\| puta	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	aspartic proteinase nepenthesin-2-like	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	64%
Blast2go	peptidase activity	GO:0008233	Molecular Function	64%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg: your sequence is longer than subject: 553 - 460

Fln protein: MKEAGSSSIQMVNNIVLGVLCFALLGFATNAASPFNETGSDLAGIRFPNHPQSILDSHGSSCDQFVANIEENPAEKTEEKRSMRVKVLHREQRHERKSKKEALLESCARDRHRAGAFHQRVLQKVSKSGFVSDVALKASDVARTASNVALNNSASALASNSSTARGATQVIATLESGVSLGSGEYFMDVFIGTPPKHFSLILDTGSDLNWLQCSPCEDCYEQIGPKYDPSMSSSYSAIPCSSAQCGLVAPPEAEAAGDRCAGNGRNSSSPCRYFYWYGDRSNTTGDLSWETFSVNVTGRRGPLRVPRVIFGCGHANRGLFHGAAGLLGLGRGQLSFTSQLRELYGHKFSYCLVDRDSNASVSSTLVFGEDERLVAHRDLQYTALIQTATSVDTFYYVRIAAVTVGGERIDVPSGAFDITAEGYGGTIVDSGTTLTYLVQPAYEKIRSAFEAKITYPRVEFPPLGPCYNVSGVGDVKLPEFSIIFTDGAVWRFPAENYFIQLDPEEAVVCLAILGTPPGSLSIVGNYQQQNFHILYDVDNSRLGFAPMTCAAI*

Protein Length: 554

Fln nts: GGGGTTCAAAGACGGGCGCCGTTGCCATTACGGGGCTGTGTTCAGTGTTTGTCTGTCCCGTGACTTGCATAGTGGATCGGGCGCTGGAAAACTGAACCAATCCGCCGTGCGATTGTGCACTGGTAATTTAGAGGATTTTTGTGGGTGTTCGTGATTTGAACGCATCCGAGGGTGTGCAGGCTGGGGATAGAGTTATCTATTGTTTAATTTATTGTTGGTGTCTGGAATTCGTGAAATCAACATCGTCACCAGTTGTTTCCAGGACTCTCGCCTTTTACAAAAGCTGCTAAATTTAAAGGCATTCAGTGTACCAGGACTCAGGACTGAAGCATATAGGGGTTTATTATTATATTGGTTGTGCGGGATTCGAACCTATAAAGTTGGGACTGGTCAAATCTGCCGCAGAAGAGGAAAACGCATATTTGCAGAAGCTGATTTCTGCTATTTTTGTTTCGGTA_-_ATGAAAGAGGCGGGTTCTTCGTCGATTCAGATGGTGAATAATATCGTGCTGGGCGTTCTATGTTTTGCTTTGCTGGGCTTTGCTACGAACGCGGCTTCTCCATTTAACGAAACCGGCTCTGATCTTGCCGGGATTCGTTTCCCGAATCACCCGCAGTCCATTCTGGACAGTCATGGTTCTAGCTGCGATCAATTCGTTGCAAATATTGAAGAAAATCCGGCGGAGAAAACAGAGGAAAAACGTTCGATGAGAGTGAAAGTCCTGCACAGAGAGCAGCGGCATGAGAGGAAAAGCAAAAAGGAAGCGTTACTGGAATCCTGCGCCAGGGATCGACACCGCGCCGGGGCCTTCCACCAGCGAGTCTTGCAGAAAGTCTCCAAATCAGGGTTCGTATCCGACGTGGCGCTCAAAGCCTCCGACGTGGCTCGCACGGCCTCCAACGTGGCATTGAACAACTCGGCTTCGGCTTTGGCTTCGAATTCCAGTACAGCACGAGGCGCGACGCAGGTGATCGCCACGCTGGAATCCGGCGTGTCGCTGGGCTCGGGTGAGTATTTCATGGACGTCTTCATCGGCACGCCACCTAAGCATTTTTCTTTAATCCTCGACACGGGTAGCGATCTCAATTGGCTTCAATGCAGTCCCTGTGAGGATTGCTATGAACAGATCGGACCAAAGTATGACCCTTCCATGTCATCCTCCTACTCAGCAATTCCCTGTTCTTCTGCACAGTGCGGTCTCGTCGCACCGCCGGAGGCGGAAGCAGCCGGTGACCGCTGTGCGGGCAACGGGCGAAACTCGTCGTCGCCTTGCCGATATTTTTACTGGTATGGTGACCGGTCCAACACCACTGGCGACCTGTCGTGGGAAACCTTTTCCGTCAACGTGACCGGCCGTCGTGGACCGTTGCGAGTACCGCGGGTCATCTTCGGCTGCGGGCATGCGAACCGGGGGCTCTTCCACGGCGCCGCCGGTCTCCTTGGTCTCGGCCGCGGGCAGCTGTCCTTCACCTCGCAGCTCCGGGAGCTTTACGGCCACAAGTTTTCCTACTGCCTCGTCGATCGTGACAGCAACGCGTCGGTCAGCAGCACCTTGGTCTTCGGTGAGGACGAGCGCCTGGTTGCCCACCGGGACCTCCAGTACACCGCCCTAATCCAGACCGCGACCTCGGTCGACACCTTCTATTACGTCCGCATCGCTGCTGTCACAGTTGGCGGCGAGCGCATCGACGTGCCATCGGGCGCCTTCGACATAACGGCGGAGGGCTACGGCGGCACCATCGTCGACTCCGGAACCACACTCACCTACCTCGTGCAGCCGGCTTACGAGAAGATCCGATCGGCGTTCGAAGCCAAGATCACCTACCCGCGCGTGGAATTCCCGCCACTCGGGCCCTGCTACAACGTTTCCGGCGTCGGTGACGTGAAGCTGCCAGAATTCAGCATTATCTTTACCGATGGGGCCGTGTGGCGGTTCCCGGCGGAGAATTATTTTATTCAGCTGGACCCGGAGGAGGCCGTGGTCTGCTTGGCCATCCTGGGGACTCCGCCGGGCTCTCTTTCAATAGTAGGGAACTACCAGCAGCAGAATTTCCACATTCTTTACGATGTTGATAATTCACGCCTCGGTTTCGCCCCCATGACGTGCGCTGCAATTTGA___TCCACAGAAGAAACCCCGTTGCCCGGGGTCGTCTAATCTACTTCTCCGTTGTTTTCGGTTGTCCGGAGAATTCGAACTCCGGACATGGCCGTTGCTTATCTAAATTCATTGATAGGATAGTTAATTTTTCCGGAGAAACCGTCTGAGGTTTTTCCGGGCATTTGTGATTAAGTTGGGTACACTAGTGAAATTGTGAAAATGTTTAGGGTTTTG

Fln Alignment:

Contig6036___IATLESGVSLGSGEYFMDVFIGTPPKHFSLILDTGSDLNWLQCSPCEDCYEQIGPKYDPXXXXXXXXXXXXXAQCGLVAPPEAEAAGDRCAGNGRNSSSPCRYFYWYGDRSNTTGDLSWETFSVNVTGRRGPLRVPRVIFGCGHAN-XXXXXXXXXXXXXXXXXXSFTSQLRELYGHKFSYCLVDRDSNASVSSTLVFGEDERLVAHRDLQYTALIQTATSVDTFYYVRIAAVTVGGERIDVPSGAFDITAEGYGGTIVDSGTTLTYLVQPAYEKIRSAFEAKITYPRVEFPPLG--PCYN-VSGVGDVKLPEFSIIFTDGAVWRFPAENYFIQLDPEEAVVCLAILGTPPGSLSIVGNYQQQNFHILYDVDNSRLGFAPMTC
A9NXW9______________VKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMC--QALPMYSCSG-----------ANCEYLYSYGDQSSTQGILSYESFTLTSQS------LPHIAFGCGQENEGGGFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNA-KTVSSTPLVQ-SRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHF-EGADFNLPKENYI--YTDSSGIACLAML--PSNGMSIFGNIQQQNYQILYDNERNVLSFAPTVC

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
257		25		75	0.996473
471		75		25	0.996473
951		75		25	0.996473
1109		50		50	1.0
1153	83		16		0.994512
1156	16			83	0.994512
1158	83	16			0.994512
1160		83	16		0.994512
1163		83	16		0.994512
1164		83		16	0.994512
1165		16		83	0.994512
1218	33		66		1.0
1371		33		66	1.0
1374		66	33		0.997452
1375		33	66		0.997452
1376	66			33	0.997452
1382		66		33	0.997452
1383		33	33	33	0.997753
1384	33	66			0.997452
1390	66		33		0.997452
1410	33		66		0.997452
1484	33		66		0.997452
1619	66	33			0.997452
1620	66			33	0.997452
1692	66		33		0.997452
1733		20		80	0.995493
1754		20		80	0.995493
1766	20		80		0.995493
1838	25	75			0.996473
1841		25	75		0.996473
1843	75	25			0.996473
1930		66		33	0.997452
2006		14	85		0.993533
2008			85	14	0.993533
2013		85		14	0.993533
2014		85	14		0.993533
2017		85		14	0.993533
2019		14	85		0.993533
2020	14		85		0.993533
2088		83		16	0.994512
2091		83		16	0.994512
2092			16	83	0.994512
2131		75		25	0.996473
2146		25		75	0.996473
2257		85		14	0.993533
2284	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain