SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6030

Length: 3102 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6030
CGTCGTGACCTTGGCTGTCACTCAAAGTGTAACTCTGTAATGAACTGCACAAACTAAATATCATACATATGGTTCTTTAACGTGAAACTATGTAGAAACAGAAAGAGTAACCCTGCACGTGGTGTAAATGACCGACGACAATAAAATACGTTATCTGGGCGTTTTTGTTGCTATAACTGTAGTATGACAGTTGACCGATGGCTTCCTTCTCATTCTCCTTCTCTTGTGCATATTTAAGACCCTTAATCCATTGTAGATGGGGCAGTCGAAGAGGATTATACACGGGGAGCTGTTTGAGGCAGAGCTCCGCGGATCACAAAACCCCAGATATGTATGCAGAGAGAATTGAGGTGCACAAGGAGAAGATGAGTGCACCTTATGGTTCATGGAAGTCTCCAATTACAGCAGATATAGTCTCTGGAGCCGATAAACGCTTGGGGGGCTTCGCCCTCGACGGGGAAGGGCGTGTCATATGGTTAGAAGGTCGTCCAACTGAAGCTGGACGGTCAGTTTTAGTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTTTCCACGCTTGATACCAGATGGGGGAAAGATGGCATGGATTGAATGGAATCACCCACATATGCCTTGGGACAAATCAGAACTCTGGGTTGGCTACATGTCTGCAGAAGGTAGGGTTGAGAAACGGATATGCATTGCAGGCAACGATCCAACTATGATAGAATCCCCTACTGAACCAAAGTGGTCATCTCAAGGAGAACTTTTCTTTGTTACAGATAGGAAGAGTGGATTCTGGAATTTGTACAAATGGGTTGAGTCAACTAGTGAGGTGCAAGCATTGTACCCATTGGATGCAGAGTTTACAAGGCCTTCGTGGGTATTTGGTAATAGTTCTTATGCTTTCATTGAGCACAAGGGACAGAATAACAACATTGCATGCACCTACAGGCAAAAAGGGGTGTCCTATCTGGGAATTCTTGATCATGTTCTCGGTTCCTTCTCCTTAGTTGATCTTCCTTTTACAGATATTTACAACATTACCTCCATTGGAAATCATTTGTACCTAGAGGGAGCATCCCCTTGGCATCCTTTATCGATAGTGAAGGTTTCCTATGAAGAGAATTCGGTTGCAGTGAGGAGCATCTCTATAATTTGGTCTTCATCTTCTTTGAAAATTCCTAAGTATAGTGCATTTATAAGCTCACCAGAAATAATTGAATTTTCTACTAAAGTTCCTGGTCAGACGGCATTTGCTTATCTCTATCTGCCTTCCAATTCCAATTACGAAGCTCCTGCAGGAGAAAAGCCACCATTACTTGTAAAAAGTCATGGGGGCCCCACTAGTGAATCGCATTCAGCATTGGATTTGAGCATCCAATATTGGACAAGCAGAGGGTGGGCTTTTGCTGATGTCAACTATGGAGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTGCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGGAAAAAGGGTTACCTGTTGCACTCATTGAGTATGAAGGCGAACAACATGGCTTCCGGAAGGCAGAGAACATCAAGTACACTATTGAACAGCAAATGGTCTTTTTTGCACGTTTGATTGGAAATTTCAAGGTGGCCGATGATATTATTCCTGTACACATAGAAAATTTCGATTAGAAGTTTAGACACTGCTACCAATGTGAAATTGTCTCTATTGCTATGTACGCATACAAAACTCGATTAAAAGTTTAGATAGTGCAACAGGTGCTGTTGCCTCAAACCCCTACAAACATGACTTATGTTATCCTATGCAATGAAACATCTCTCATGTATTTTTCCACTTATTAATGGGAATTACCGTTGGTCCCATTAGAGGTGAATTGGGCCATTGAAGCAGAATGTTTTACAAATAAAATGACCTACATAAACAATGTTCGAATGCATCTGTTTGCACATAAATCTGAGTTTTTTGTATATACAGATCCGCTTCTACTTGTGTTTTGCTATCATGTAAATATCATACTAGTCATGAGAAAAACATGATACATGATACAGCATGTGCAGATGCATGCATTTGGGCTGCATGTGCATATGTCAGACTTCGAAAATTAAGTTCATTGTGAATAATATATTGACCCAAGGTTAGTGGATCCCGCCTTGTATGGCCGGGTTTATTCTGAGTGCAGGGACCTATGATGGAATCTTCTGGGACATCGATCTGAAATGATTACCAAAATTAGTAAATTCATGTTCTGTAACTTTAATTGTCATCTGTAACATGATGATACCCATTCCCTTGATAGAGTAACAAAACCTTATCAATGTTTTGTAATCTCAAGTGGAACGAGAGTATGTAATAAATTTTAATTAACAAGTTATTTTGAGAGATAAAAGTCCATGATGATTGTATGCT

Ace file of the UniGene sp_v2.0_unigene6030 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acylamino-acid-releasing enzyme, putative (EC:3.4.19.1)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	acyl-peptide hydrolase-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWZ2

Fln msg:

Fln protein: MASFSFSFSCAYLRPLIHCRWGSRRGLYTGSCLRQSSADHKTPDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVREAADAGGAAEDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAFPRLIPDGGKMAWIEWNHPHMPWDKSELWVGYMSAEGRVEKRICIAGNDPSMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTSEVQALYPLDAEFTRPSWVFGNSSYAFIEHKGQNNNIACTYRQKGVSYLGILDHVLGSFSLVDLPFTDIYNITSIGNHLYLEGASPWHPLSIVKVSYEENSVAVRSISIIWSSSSLKIPKYSAFISSPEIIEFSTKVPGQTAFAYLYLPSNSNYEAPAGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVKEKGLPVALIEYEGEQHGFRKAENIKYTIEQQMVFFARLIGNFKVADDIIPVHIENFD*

Protein Length: 724

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTGTAACTCTGTAATGAACTGCACAAACTAAATATCATACATATGGTTCTTTAACGTGAAACTATGTAGAAACAGAAAGAGTAACCCTGCACGTGGTGTAAATGACCGACGACAATAAAATACGTTATCTGGGCGTTTTTGTTGCTATAACTGTAGTATGACAGTTGACCG_-_ATGGCTTCCTTCTCATTCTCCTTCTCTTGTGCATATTTAAGACCCTTAATCCATTGTAGATGGGGCAGTCGAAGAGGATTATACACGGGGAGCTGTTTGAGGCAGAGCTCCGCGGATCACAAAACCCCAGATATGTATGCAGAGAGAATTGAGGTGCACAAGGAGAAGATGAGTGCACCTTATGGTTCATGGAAGTCTCCAATTACAGCAGATATAGTCTCTGGAGCCGATAAACGCTTGGGGGGCTTCGCCCTCGACGGGGAAGGGCGTGTCATATGGTTAGAAGGTCGTCCAACTGAAGCTGGACGGTCAGTTTTAGTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTTTCCACGCTTGATACCAGATGGGGGAAAGATGGCATGGATTGAATGGAATCACCCACATATGCCTTGGGACAAATCAGAACTCTGGGTTGGCTACATGTCTGCAGAAGGTAGGGTTGAGAAACGGATATGCATTGCAGGCAACGATCCAtCTATGATAGAATCCCCTACTGAACCAAAGTGGTCATCTCAAGGAGAACTTTTCTTTGTTACAGATAGGAAGAGTGGATTCTGGAATTTGTACAAATGGGTTGAGTCAACTAGTGAGGTGCAAGCATTGTACCCATTGGATGCAGAGTTTACAAGGCCTTCGTGGGTATTTGGTAATAGTTCTTATGCTTTCATTGAGCACAAGGGACAGAATAACAACATTGCATGCACCTACAGGCAAAAAGGGGTGTCCTATCTGGGAATTCTTGATCATGTTCTCGGTTCCTTCTCCTTAGTTGATCTTCCTTTTACAGATATTTACAACATTACCTCCATTGGAAATCATTTGTACCTAGAGGGAGCATCCCCTTGGCATCCTTTATCGATAGTGAAGGTTTCCTATGAAGAGAATTCGGTTGCAGTGAGGAGCATCTCTATAATTTGGTCTTCATCTTCTTTGAAAATTCCTAAGTATAGTGCATTTATAAGCTCACCAGAAATAATTGAATTTTCTACTAAAGTTCCTGGTCAGACGGCATTTGCTTATCTCTATCTGCCTTCCAATTCCAATTACGAAGCTCCTGCAGGAGAAAAGCCACCATTACTTGTAAAAAGTCATGGGGGCCCCACTAGTGAATCGCATTCAGCATTGGATTTGAGCATCCAATATTGGACAAGCAGAGGGTGGGCTTTTGCTGATGTCAACTATGGAGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTGCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGGAAAAAGGGTTACCTGTTGCACTCATTGAGTATGAAGGCGAACAACATGGCTTCCGGAAGGCAGAGAACATCAAGTACACTATTGAACAGCAAATGGTCTTTTTTGCACGTTTGATTGGAAATTTCAAGGTGGCCGATGATATTATTCCTGTACACATAGAAAATTTCGATTAG___AAGTTTAGACACTGCTACCAATGTGAAATTGTCTCTATTGCTATGTACGCATACAAAACTCGATTAAAAGTTTAGATAGTGCAACAGGTGCTGTTGCCTCAAACCCCTACAAACATGACTTATGTTATCCTATGCAATGAAACATCTCTCATGTATTTTTCCACTTATTAATGGGAATTACCGTTGGTCCCATTAGAGGTGAATTGGGCCATTGAAGCAGAATGTTTTACAAATAAAATGACCTACATAAACAATGTTCGAATGCATCTGTTTGCACATAAATCTGAGTTTTTTGTATATACAGATCCGCTTCTACTTGTGTTTTGCTATCATGTAAATATCATACTAGTCATGAGAAAAACATGATACATGATACAGCATGTGCAGATGCATGCATTTGGGCTGCATGTGCATATGTCAGACTTCGAAAATTAAGTTCATTGTGAATAATATATTGACCCAAGGTTAGTGGATCCCGCCTTGTATGGCCGGGTTTATTCTGAGTGCAGGGACCTATGATGGAATCTTCTGGGACATCGATCTGAAATGATTACCAAAATTAGTAAATTCATGTTCTGTAACTTTAATTGTCATCTGTAACATGATGATACCCATTCCCTTGATAGAGTAACAAAACCTTATCAATGTTTTGTAATCTCAAGTGGAACGAGAGTATGTAATAAATTTTAATTAACAAGTTATTTTGAGAGATAAAAGTCCATGATGATTGTATGCT

Fln Alignment:

Contig6030___CAYLRPLIHCRW-GSRRGLYTGSCLRQSSADHKTPDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVRXXXXXXXXXXDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAFPRLIPDGGKMAWIEWNHPHMPWDKSELWVGYMSAEGRVEKRICIAGNDPSMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTSEVQALYPLDAEFTRPSWVFGNSSYAFIEHKGQNNNIACTYRQKGVSYLGILDHVLGSFSLVDLPFTDIYNITSIGNHLYLEGASPWHPLSIVKVSYEENSVAVRXXXXXXXXXSLKIPKYSAFISSPEIIEFSTKVPGQTAFAYLYLPSNSNYEAPAGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVKEKGLPVALIEYEGEQHGFRKAENIKYTIEQQMVFFARLIGNFKVADDIIPVHIENFD
A9NWZ2______________CAYLRPLFYCRSITSRRGIYTVNCLRQSSADHKTTDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVREAADEEGTAEDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGGHAPIALTPDYGAPVVRYADGVMDLHLGCYVTVREDHRESDTNPTTTIVSVELNGAGTTEPHVLVSGSDFYAFPRLTPDGGKMAWIEWNHPNMPWDKSELWVGYMSAEGKVEKRICIAGNDPNMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTNEVKALYPLDAEFTRPSWVFGNSSYAFIEQKGQNKNIACTYRQKGMSYLGILDHVLGSFSLVDLPFTDIYNITSIGSHLYLEGASPLHPLSIVKVSYEENLIAVRGISIIWSSSSLNISEYSAFISSPEIVEFSTKVPGQTAFAYLYLPSNYNYEAPEGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGRVDGERLCITGRSAGGYTTLAALVFRETFKAGASLFGVADVSLLKADTHKFESYYTDSLVGKDESLLYERSPINFVDRLSCPMILFQGLEDKVVPPEQARKIYAAVKEKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARLIGNFKVADDIIPVHIENFD

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
427	80		20		0.995493
464		80		20	0.995493
477		20		80	0.995493
819		18		81	0.999994
1575	88		11		0.923564
1610	90	10			0.90298
1613			10	90	0.90298
1616		10		90	0.90298
1617	90			10	0.90298
1836			88	11	0.923564
1958	12			87	0.992554
1987	12			87	0.992554
2025			25	75	0.996473
2042		75	25		0.996473
2051	33			66	0.997452
2265	25	75			0.996473
2375	80		20		0.995493
2533	90			10	0.90298
2534	40		10	50	1.0
2537		90	10		0.90298
2542	90	10			0.90298
2543	10		90		0.90298
2544	10		90		0.90298
2548		10	90		0.90298
2550		10		90	0.90298
2551	90		10		0.90298
2552	10			90	0.90298
2554			10	90	0.90298
2605	55		44		1.0
2708			80	20	0.995493
2716	20			80	0.995493
2717			20	80	0.995493
2721	20			80	0.995493
2723	80		20		0.995493
2724	80			20	0.995493
2726	20	80			0.995493
2727	80	20			0.995493
2728			20	80	0.995493
2730	83	16			0.994512
2746		20		80	0.995493
2820		66		33	1.0
2821		66	33		1.0
2848	33	66			1.0
2850		66		33	1.0
2851		33	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain