SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5827

Length: 792 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5827

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	4.0e-16	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	0.0	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRL7

Fln msg: Distance to subject end: 179 aas, atg_distance in limit (1-15): atg_distance = 16, your sequence is shorter than subject: 257 - 452

Fln protein: MSGVVEASTANCRSSVKPLNRKVGNWKRSVSFPLMHLYSECSPFRPPNRTWESLISERIKADANRLRFLKRSMSNSRSSNIDQEDDANVPVMPGSGAYIINVGFGTPKQSMYTLIDTGSDVAWIPCAQCQGCDSTAASPFDSTLSSSYSSLDCNSQACQEAPKANCGENDECDVQLSYGDGSVVEGPLSSDAITLGAQSLPNFSFACAESVSGLNQNQPGLMGLGGGPLSLLNQPTTELFGGTFSYCLPSLQASSAS

Protein Length: 258

Fln nts: CACGAGGGCTTGCTGTACTA_-_ATGTCTGGAGTGGTCGAGGCCTCCACTGCGAACTGTCGGAGTAGTGTCAAACCTTTGAATAGAAAAGTGGGGAACTGGAAACGTAGCGTGAGCTTTCCACTTATGCATCTTTATTCAGAGTGTTCACCTTTCCGACCTCCAAACAGGACGTGGGAAAGCTTGATATCTGAAAGAATTAAAGCCGACGCCAATCGCCTCCGATTTTTGAAGCGCTCCATGTCGAATTCTCGTTCATCCAATATCGACCAAGAAGACGACGCTAACGTCCCTGTTATGCCAGGGTCCGGAGCGTACATAATAAATGTGGGTTTTGGCACGCCCAAGCAAAGCATGTATACGCTTATAGATACGGGTAGCGATGTTGCTTGGATTCCGTGCGCACAGTGCCAAGGCTGCGACTCGACTGCCGCTTCACCTTTCGACTCTACATTGTCTTCGTCCTATAGTTCCTTAGACTGCAATTCACAGGCATGTCAGGAAGCTCCTAAAGCGAATTGCGGGGAAAATGACGAATGTGATGTGCAACTGTCGTATGGAGATGGCTCTGTTGTGGAGGGTCCACTTTCTTCCGACGCGATCACTCTTGGCGCTCAATCTCTTCCTAATTTCTCATTCGCTTGTGCGGAGTCCGTAAGCGGATTAAATCAAAACCAACCGGGGCTGATGGGATTGGGAGGTGGACCACTTTCGTTGCTGAATCAGCCCACCACAGAATTATTCGGCGGAACGTTTTCTTACTGTCTTCCCAGCTTGCAGGCATCGTCAGCATCTT

Fln Alignment:

Contig5827___MSGVVE-ASTANCRSSVKPLNRKVGNWKRSVSFPLMHLYSECSPFRPPNRTWESLISERIKADANRLRFLKRSMSNSRSSNIDQEDDANVPVMPGSGAYIINVGFGTPKQSMYTLIDTGSDVAWIPCAQCQGCDSTAAXXXXXXXXXXXXXXXXXXQACQEAPKANCGENDECDVQLSYGDGSVVEGPLSSDAITLGAQSLPNFSFACAESVS-XXXXXXXXXXXXXXXXXXXXXXXTTELFGGTFSYCLPSLQASSAS
B8LRL7______________MCGVAEIAPGLNCRSSDKILNRKVGKRSHSVSFPLIHIYSECSPFRPPNRTWESLMSEKIRGDANRLRFLKRT---SRSSK--QDANANVPVRSGSGEYIIQVDFGTPKQSMYTLIDTGSDVAWIPCKQCQGCHST-APIFDPAKSSSYKPFACDSQPCQEI-SGNCGGNSKCQFEVSYGDGTQVDGTLASDAITLGSQYLPNFSFGCAESLSEDTSPSPGLMGLGGGSLSLLTQAPTAELFGGTFSYCLPSSSTSSGS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
657	25		75		1.0
731	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain