SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5822

Length: 1171 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5822

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial translational initiation factor, putative n=1 Tax=Ricinus communis RepID=B9RCM3_RICCO	-	-	73%
FL-Next	sp=Translation initiation factor IF-2, chloroplastic; Porphyra purpurea. Plastid; Chloroplast.	-	-	38%
Blast2go	translation initiation factor if-2	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	78%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	78%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	78%
Blast2go	GTPase activity	GO:0003924	Molecular Function	78%
Blast2go	GTP binding	GO:0005525	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor aIF-2, bacterial-like	IPR000178	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
197	71		28		1.0
212			71	28	1.0
219		71		28	1.0
224		28		71	1.0
233		28		71	1.0
269		16		83	0.994512
299		20		80	0.995493
1003			90	10	0.90298
1006		10	90		0.90298
1007	10		90		0.90298
1008			90	10	0.90298
1043	10	90			0.90298
1046	90		10		0.90298
1047	88		11		0.923564
1056			77	22	0.999999
1091		62		37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain