SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5698

Length: 1590 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5698 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NTR6_PICSI	-	-	91%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	atp-dependent clp protease proteolytic subunit	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	85%
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	chloroplast organization	GO:0009658	Biological Process	85%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	85%
Blast2go	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTR6

Fln msg:

Fln protein: MVSVTLSTCLSSSALLPRKTQNPLQPHKPPCGNLLFPARTPFSYSNASISGGLDGNQITFARLMSSSGRGFKSRAYIDAWAAATGGRVIAQQTPALAQRSADADVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPAKDIRLFINCPGGSINAAMGIFDTIQLCRADVSTIAFGLAASTASIVLAGGTKGKRLAMPNTRIMMHQPLGGASGSAIDVEIQAKEIMYHKSNVTRIISERTGRTTEEVDNDMDRDRYMSPMEAVEYGLIDGVIDKESIIPLPVMPEMVKPTLNFADASKDFEKFITPHIPDDEIY*

Protein Length: 319

Fln nts: ACGTCGTGACCTTGGCTGTCACTCAATTGATCGTTCGAAACCTGTATCCCGTGGCTTTATCGTTCATAACCTGTATCGTGGCTTTATCAATTTGATCGTTCGAAACCTGTATTCTTTTTACTAATTAATAGTAAACCGCCATATCGCATAAGCCCGGTCTGTGTCTTTTGAACTCGAGATATCATAGAAGCAACAAGC_-_ATGGTATCTGTTACCTTATCTACATGTCTGTCCTCCTCAGCCCTCTTGCCCCGCAAAACCCAAAACCCTCTCCAGCCCCACAAACCCCCATGTGGGAACTTACTTTTCCCAGCTAGAACACCGTTTTCTTATTCAAATGCGTCAATTTCAGGAGGTTTGGATGGCAACCAAATCACATTTGCCAGGTTAATGTCTTCATCCGGTCGTGGTTTCAAATCCCGGGCTTACATAGACGCATGGGCTGCTGCTACGGGTGGGCGTGTTATTGCACAGCAGACTCCAGCATTGGCTCAGAGATCTGCGGACGCAGATGTAATGGGTCTTCTTTTGAGGCAGAGGATAGTCTTCTTGGGAAGCAACATGGATGACTTTGTAGCAGATGCCATCATTAGTCAGTTGCTTCTGTTGGATGCTCAAAACCCCGCCAAGGACATTCGACTTTTCATTAATTGTCCCGGTGGTTCCATCAATGCAGCTATGGGCATCTTTGATACAATACAGCTTTGCAGGGCAGATGTGTCCACCATTGCTTTTGGACTCGCTGCGTCAACTGCATCCATAGTTTTAGCAGGAGGAACAAAAGGAAAGCGGCTTGCCATGCCGAATACTCGAATCATGATGCACCAACCTCTCGGAGGAGCAAGTGGGTCAGCTATTGATGTTGAGATTCAAGCAAAAGAAATTATGTATCATAAGAGCAATGTGACCAGGATAATATCTGAGAGAACAGGGCGTACAACTGAGGAGGTTGACAATGATATGGACAGGGACCGCTACATGTCTCCAATGGAAGCTGTGGAGTATGGACTTATTGATGGTGTGATCGATAAAGAGTCCATCATACCTCTTCCCGTTATGCCAGAGATGGTGAAACCTACGCTAAATTTTGCAGACGCAAGTAAAGATTTTGAGAAGTTCATAACACCTCATATTCCAGATGACGAGATCTATTAG___CCTTCTAATAAAGGAATTTCAGCGCCTTAGAATTGAGCTATTGGTTTGAATGAGATAAACTAGTTAATGAGGCAGTCGATCGTACCATGCACCCTCTCATCTATATGGTGCATCACTGCCTAAGTTTTTTTTGCACATTTATATACTACCCTGTCCACCATTTAATATGTTTTATGGTTTGTTATAGAAAAAATTAGTTGGGGTATTTTTAACCTTGTATTATGTTTTATGCTTTTAGTTTCTTTTACTAGTAAGCAACCTGGAAAAGTTGCTGTCACAGTGATATTCCCTCAGAGGCATGGCGAGAATGAGAATGTTAGTATCTGATCCCCAATCTTCATTATATCAAAATAAAAAACCCTCCATAAGATAATATCTGAGTAGTCATTTTCATAAATCATAGGGATCGACTGTATAGAATATGAAAGACAATGCACA

Fln Alignment:

Contig5698___PRKTQNPLQPHKPPCGNLLFPARTPFSYSNASISGGLDGNQITFARLMSSSGRGFKSRAYIDAWAAATGGRVIAQQTPALAQRSADADVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPAKDIRLFINCPGGSINAAMGIFDTIQLCRADVSTIAFGLAASTASIVLAGGTKGKRLAMPNTRIMMHQPLGGASGSAIDVEIQAKEIMYHKSNVTRIISERTGRTTEEVDNDMDRDRYMSPMEAVEYGLIDGVIDKESIIPLPVMPEMVKPTLNFADASKDFEKFITPHIPDDEI
A9NTR6______________PCNTQNPLQPHKPPCGHLLIPARTPISYSNASISGGLDSSHMAFPRLVSSSGRGFKSRAYIDAWAAATGGGVIAQQTPASAQRSADGDVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPNKDIRLFINCPGGSINAAMGIFDTIQLCRADVSTIAFGLAASTASIVLAGGSKGKRLAMPNTRIMMHQPLGGASGSAIDVEIQAKEIMYHKSNVTRIISERTGRSTEQVDNDMDRDRYMSPMEAVEYGLIDGVIDKESIIPLPILPETVKPTLSFAEASKDFDKFITPHIPDDEI

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
123	12	87			0.992554
588		85	15		1.0
593			15	85	1.0
605	84		15		1.0
606	15			84	1.0
607		15		84	1.0
747		91	8		0.999766
750	8			91	0.999766
1294		11	88		0.999952
1295	11			88	0.999952
1323	30		69		1.0
1381	88		11		0.999952
1411	86			13	0.999973
1412			13	86	0.999973
1413	13	86			0.999973
1414			13	86	0.999973
1415		86		13	0.999973
1418		20	80		1.0
1419	20			80	1.0
1420			13	86	0.999973
1422	83	16			0.999991
1425	83		16		0.999991
1427	83			16	0.999991
1435		81	18		0.999994
1436			88	11	0.923564
1438	12	12	75		0.999931
1440	12			87	0.999964
1479	90		10		0.90298
1481	30	70			1.0
1508	90	10			0.90298
1510		90		10	0.90298
1511		90	10		0.90298
1513		90		10	0.90298
1515	88	11			0.923564
1573	33	66			0.997452
1582		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain